PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g09560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 726aa MW: 83663 Da PI: 6.7517 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77 | 3.7e-24 | 73 | 164 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFsvrk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke ++w+v+++++ HnHel CA07g09560 73 EYYSNFARKNGFSVRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIadgVAQWYVSQFSNIHNHELL 164 69********************8888.******************************************998766789*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.3E-22 | 73 | 164 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.4E-23 | 296 | 388 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.064 | 599 | 634 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.4E-5 | 608 | 633 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0012 | 609 | 636 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MEITAAKPFN NIWIRRQQCP CGDWKCYIKA DGDEQGANVS QTTKSEATSS SSQDIVFTPY 60 VGQIFKGDDE AFEYYSNFAR KNGFSVRKAR STESQNLGIY RRDFVCYRSG FNQPRKKANV 120 EHPRDRKSVR CGCDAKLYLT KEIADGVAQW YVSQFSNIHN HELLEDDQVR LLPAYRKIQE 180 ADQERILLLS KAGFPVNRIV KVLELEKGVQ PGQLPFIEKD VRNFVRTCKK TVEENDALIT 240 EKRENDLLDL LEGCKASEQK DEGFVYSFTT DENGRVENIA WSYGHSRQAY SFFGDVVTFD 300 TTYRSITYNM IFGVWFGIDN HGNVLFLGCV LLQDETSQSF TWALQSFVRF MRGRQPQTIV 360 TDIDSGLRDA IASEMPNTKH VISIWQVLSK LSSWFSLPLG LQYPDFKSEF DVLCRLENVE 420 DFEHQWNQLV ARFGLGSDKH IALLLSYRAS WPSSYMRNFF LARTMMIEYW KLVETYMKNI 480 LSPQSSLLLF FEKVQNNYNC LTSLSLTCLV HDLMTNSAHF KPPQVGSASN VGSHKKEKQL 540 YMPAKTCLPV EEHSRSILTP YAFNIMQHEI MLSMQYAITE MANSSYLVRH YKKMEAECLV 600 IWIHEDEQVH CSCKEFEHSG IMCRHSIRVL VSKNYFQIPE KYFPLRWRLE SSLAPLDDSV 660 IQSSKNEYSQ VFHALCGSLY SESSISKQRF DYVNRELKQL LEHVQNMPSV DEVAVSSAPI 720 NVGEL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016580466.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_016580467.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_016580469.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_016580470.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A2G2Z1J6 | 0.0 | A0A2G2Z1J6_CAPAN; Uncharacterized protein | ||||
STRING | XP_009624952.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7532 | 19 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Publications ? help Back to Top | |||
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