PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA07g08600

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 866aa MW: 99414 Da PI: 7.2331

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA07g08600	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85	1.2e-26	90	192	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g++++ +k+ e++ +ra +t+Cka+++vk++ dgkw ++++e+eHnH CA07g08600 90 FYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKRDYEKSanrprsrqgnkqdPENATGRRACAKTDCKASMHVKRRPDGKWIIHRFEKEHNH 188 9************************************9999999899999888776555556699****************************** PP FAR1 88 elap 91 el p CA07g08600 189 ELLP 192 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-24	90	192	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-25	290	382	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.458	570	606	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	0.0011	578	603	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.6E-5	581	608	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010218	Biological Process	response to far red light
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence Send to blast
MDIDLRLPSQ DHDKEEEEEQ NGIINMLDNE EKMHSDDGMH GMLVIEEKMH AEDGGDMNTP 60 IGTMIEFKED VNLEPLAGME FESHGEAYAF YQEYARSMGF NTAIQNSRRS KTSREFIDAK 120 FACSRYGTKR DYEKSANRPR SRQGNKQDPE NATGRRACAK TDCKASMHVK RRPDGKWIIH 180 RFEKEHNHEL LPAQAVSEQT RRMYAAMARQ FAEYKNVVGL KSDTKGPFEK GRNSAMEGGD 240 INVLLEFFIQ MQNLNSNFFY AVDVGEDQRV RNLFWVDAKA RHDYANFNDV VSFDTAYVRN 300 KYKMPLALFV GVNQHFQFML LGCALVSDES AATFFWVMRT WLKAMGGQAP KTVITDHDQV 360 LKSVIPEALP LSLHYFCLWH ILGKVSDTLN HIIKQNEKFM PKFEKCIHRS WTDEEFEKRW 420 RKLVDKFDLR EAELIHSLYE DRMKWAPTFI RDVLLAGMSM VLRSESVNSF FDKYVHKKTT 480 VQELVKQYES ILQDRYEEEA KADSDTWNKQ PALKSPSPFE KQVAGLYTNA VFKKFQAEVL 540 GAVACIPKRE KQDATTITYR VQDFEKTQEF IVTLDEMKSE ISCLCHLFEF KGYLCRHTLI 600 VLQICRVSSI PSQYILKRWT KDAKSKYSMT DGSEELQSRF QRYNELCHRA MKLSEEGSLS 660 QESYSFALRA LDDAFGSCVT FNNSNKNMLE AGTSSASGIL CIEDDNQSRS MSKTNKKKNN 720 FTKKRKVNSE PDVMAVGPAD SLQQMDKLNS RPVTLDGYFG PQQSVQGMVQ LNLMAPTRDN 780 YYGNQQTIQG LGQLNSIAPT HDGYYGAQPT MHGLVCGLLV LELLTQINPK SFLQFHFYCC 840 RGKWTFSALQ VSHMVFGLVS NILRL*

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence Send to blast

MDIDLRLPSQ DHDKEEEEEQ NGIINMLDNE EKMHSDDGMH GMLVIEEKMH AEDGGDMNTP  60
IGTMIEFKED VNLEPLAGME FESHGEAYAF YQEYARSMGF NTAIQNSRRS KTSREFIDAK  120
FACSRYGTKR DYEKSANRPR SRQGNKQDPE NATGRRACAK TDCKASMHVK RRPDGKWIIH  180
RFEKEHNHEL LPAQAVSEQT RRMYAAMARQ FAEYKNVVGL KSDTKGPFEK GRNSAMEGGD  240
INVLLEFFIQ MQNLNSNFFY AVDVGEDQRV RNLFWVDAKA RHDYANFNDV VSFDTAYVRN  300
KYKMPLALFV GVNQHFQFML LGCALVSDES AATFFWVMRT WLKAMGGQAP KTVITDHDQV  360
LKSVIPEALP LSLHYFCLWH ILGKVSDTLN HIIKQNEKFM PKFEKCIHRS WTDEEFEKRW  420
RKLVDKFDLR EAELIHSLYE DRMKWAPTFI RDVLLAGMSM VLRSESVNSF FDKYVHKKTT  480
VQELVKQYES ILQDRYEEEA KADSDTWNKQ PALKSPSPFE KQVAGLYTNA VFKKFQAEVL  540
GAVACIPKRE KQDATTITYR VQDFEKTQEF IVTLDEMKSE ISCLCHLFEF KGYLCRHTLI  600
VLQICRVSSI PSQYILKRWT KDAKSKYSMT DGSEELQSRF QRYNELCHRA MKLSEEGSLS  660
QESYSFALRA LDDAFGSCVT FNNSNKNMLE AGTSSASGIL CIEDDNQSRS MSKTNKKKNN  720
FTKKRKVNSE PDVMAVGPAD SLQQMDKLNS RPVTLDGYFG PQQSVQGMVQ LNLMAPTRDN  780
YYGNQQTIQG LGQLNSIAPT HDGYYGAQPT MHGLVCGLLV LELLTQINPK SFLQFHFYCC  840
RGKWTFSALQ VSHMVFGLVS NILRL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00078	ChIP-seq	Transfer from AT3G22170	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013715	0.0	BT013715.1 Lycopersicon esculentum clone 132560F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016580413.1	0.0	PREDICTED: LOW QUALITY PROTEIN: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A2G2Z0V7	0.0	A0A2G2Z0V7_CAPAN; Protein FAR-RED ELONGATED HYPOCOTYL 3
STRING	XP_009804946.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]