PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g02550
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 297aa    MW: 33237 Da    PI: 7.5694
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g02550genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.81.1e-19125225198
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k lt sd +++  l++ ++ a ++       ++k+  ++l+ +d++g +W++++ ++++++r++ltkGW +Fv +++L +gD+v+F   + +++ l+
  CA07g02550 125 FCKNLTASDINSNWGLTVRRDDAIKCfppldiTKEKPI-QELIATDLHGFEWQFTHVFQGQPRRHLLTKGWGKFVASKRLVVGDSVIFL--RGENGGLR 220
                 89****************************87434444.389***********************************************..3477779* PP

                 EEEE- CS
          B3  94 vkvfr 98 
                 v+++r
  CA07g02550 221 VGIRR 225
                 **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-25119231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-34121239IPR015300DNA-binding pseudobarrel domain
CDDcd100173.77E-18123225No hitNo description
PROSITE profilePS5086310.771125227IPR003340B3 DNA binding domain
SMARTSM010194.5E-17125227IPR003340B3 DNA binding domain
PfamPF023629.8E-17125225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDAITGSSHQ QQQQNHVLFQ GDNLYSELWK ACAGPMMDLP RPGERVFYFP MMHVELLKES  60
ADQIVPSFHL PSRILCRVIN IQLKVEPETD EVYTQITSLP EENQNDQTIP DALSPEPPTL  120
QFHSFCKNLT ASDINSNWGL TVRRDDAIKC FPPLDITKEK PIQELIATDL HGFEWQFTHV  180
FQGQPRRHLL TKGWGKFVAS KRLVVGDSVI FLRGENGGLR VGIRRCAHPS HNIGSSPVSS  240
QTVEGVLSVV SHAFAAGTLF SVYCQPRYNK PVTSSSRRTL LLHACSYKCL IVIFPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-9642701270Auxin response factor 1
4ldw_A1e-9642701270Auxin response factor 1
4ldw_B1e-9642701270Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579839.10.0PREDICTED: auxin response factor 1-like isoform X2
SwissprotQ8L7G09e-93ARFA_ARATH; Auxin response factor 1
TrEMBLA0A2G2WAX20.0A0A2G2WAX2_CAPBA; Auxin response factor 1
TrEMBLA0A2G2Z0620.0A0A2G2Z062_CAPAN; Auxin response factor 1
TrEMBLA0A2G3BXK70.0A0A2G3BXK7_CAPCH; Auxin response factor 1
STRINGXP_009783661.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14681810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.44e-95auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]