PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g02260
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARR-B
Protein Properties Length: 670aa    MW: 73590.4 Da    PI: 7.2101
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g02260genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.65.8e-23205254252
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                 +r++W+ eLH++Fv av qL G+ekA+Pk+il+lm+v+ Lt+e+v+SHLQ 
  CA07g02260 205 ARVVWSIELHRKFVAAVGQL-GIEKAVPKRILDLMNVDRLTRENVASHLQA 254
                 79******************.*****************************5 PP
2Response_reg81.13.5e-27221301109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ll ++l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++  ++ + ++ Ga 
    CA07g02260  22 VLAVDDNPICLKLLDSLLRKCQY-QVTTTSQARMALKMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDTRLVMKGISHGAC 116
                   799********************.***************888889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+ +eel++
    CA07g02260 117 DYLVKPVRIEELRN 130
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.7E-1431639IPR017053Response regulator B-type, plant
SuperFamilySSF521724.55E-3619148IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.1E-4319157No hitNo description
SMARTSM004487.8E-3320132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.8721136IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-2422131IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.63E-2923136No hitNo description
SuperFamilySSF466896.81E-14201255IPR009057Homeodomain-like
PROSITE profilePS5129410.371201261IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-22201254IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-20205255IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MTVEEIRGNM GGGDNFPIGM RVLAVDDNPI CLKLLDSLLR KCQYQVTTTS QARMALKMLR  60
ENKDRFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSA NSDTRLVMKG ISHGACDYLV  120
KPVRIEELRN IWQHVIRRKK VEPKTQSKSN NHVKSNHESG ESGRGQSPTG NADHNGKCNK  180
KRKDEEDEND ENGNDNEDPT TQKRARVVWS IELHRKFVAA VGQLGIEKAV PKRILDLMNV  240
DRLTRENVAS HLQALVLAPS LLFHLFYLII TQKINSVQTQ QANMVAALGG RDYVRMGSLD  300
GLGDFRTLGG SGRYTHAALS SYSSGGMLGR LNSAAGLTIR NLTASQLLQP SHGQNLSNPV  360
NAFTKMEPNI PPASQNASIF QGIPASLELD QLQKTKSTSH IPLDESRLLT SDVLGCSSNS  420
LSNVPNNPML LQGNPLQPLT GGGFGNQHSP NMTPFSSDSF NTGVNGSSNF LEHGQNSVQL  480
SKFQSSSFPL TQSFISSHLP QDSSTETTTH LQNSPLDFTF PNSVSPPFED SRGEIQYRQN  540
MTGAVQSMNQ IPSQSWVDNK QLYSHNSNNT PGNNFSSQVP NNGSMASLSH NMNQSNENFS  600
RRTDMSLIGR SNGGSSTLVQ HNEHEKLTPG SRTRSNEEYL LEPTKQGVLG FSPQGYDSLD  660
DLMTAMKRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-21200258159ARR10-B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579827.10.0PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ORR24
TrEMBLA0A2G2Z0870.0A0A2G2Z087_CAPAN; Two-component response regulator
STRINGSolyc07g005140.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-112response regulator 12