PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g01910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | WRKY | ||||||||
Protein Properties | Length: 385aa MW: 42032.2 Da PI: 9.2202 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 77.8 | 1.2e-24 | 75 | 131 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+ + +rsYYrCt+ +C++kk +e+s + ++v+ei+Y++eHnh+ CA07g01910 75 RDGYNWRKYGQKQVKSPQGTRSYYRCTHFECCAKK-IECSGHTNRVMEIIYRSEHNHD 131 7********************************98.*********************7 PP | |||||||
2 | WRKY | 96.1 | 2.5e-30 | 247 | 304 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vkg+++pr+YYrC+sagCpv+k++er+ + + +++itY+g H+h+ CA07g01910 247 SDGYRWRKYGQKMVKGNPHPRNYYRCSSAGCPVRKHIERAVDSTIALTITYKGVHDHD 304 7****************************************99999***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-20 | 72 | 131 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-22 | 74 | 132 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-19 | 74 | 132 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-17 | 76 | 131 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.293 | 76 | 133 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-31 | 231 | 306 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-27 | 240 | 306 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.204 | 241 | 306 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.1E-35 | 246 | 305 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.2E-24 | 248 | 303 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MNAQARTKHQ QRVPDESSTL ELSSTSVAQS ISSVPSPTLA ESRLSAVVNC GTGEVAKQSS 60 DAKVQPLVPV KTSNRDGYNW RKYGQKQVKS PQGTRSYYRC THFECCAKKI ECSGHTNRVM 120 EIIYRSEHNH DPSPSVTCSR ESKSAILSAS TNGKSLIDHP NRNSNETVAS SFKENLQESL 180 PIAETANLDS GGSDTDTEIN IKEEHCDEPE QKKRSRKSDA SCYESVSKPG KKPKLVVHAA 240 CDVGISSDGY RWRKYGQKMV KGNPHPRNYY RCSSAGCPVR KHIERAVDST IALTITYKGV 300 HDHDMPVPKR RHGPPSAPLI AAAAAPASIT DMKKPEPLQH QKSTTQWSVD KQGELTSEKL 360 DLGGGKAMGS ARTLLSIGFE IKPC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-27 | 234 | 306 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579780.1 | 0.0 | PREDICTED: probable WRKY transcription factor 32 | ||||
Swissprot | P59583 | 1e-106 | WRK32_ARATH; Probable WRKY transcription factor 32 | ||||
TrEMBL | A0A2G2YZX8 | 0.0 | A0A2G2YZX8_CAPAN; Putative WRKY transcription factor 32 | ||||
STRING | Solyc07g005650.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9189 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30935.1 | 3e-99 | WRKY DNA-binding protein 32 |