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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g25920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 681aa MW: 76867 Da PI: 6.4334 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 353.8 | 2.7e-108 | 306 | 676 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL++cAea ++ + + ++L ++++++sp gd++ Rla yf++AL+ar a+ ++ + ++++ + +e l+a++++ ++P+ ++s++ aN+ CA06g25920 306 TSLLTRCAEAAATYNSKTFIQVLDKIKQHSSPFGDATARLAYYFANALEARFAG-GD-----ATLATSKRISAAEFLKAYQIYIAACPFKRMSNIFANK 398 689***************************************************.22.....2223333345899************************ PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 I + ++ + rvHiiDf+i +G+QWp++++ ++ Rp+gpp+lRiTg++ p++g +e++eetg+ L++++++++vpfe+++ +ak++++++le+L+++ CA06g25920 399 SIAKLTSASPRVHIIDFGILYGFQWPCIIHGISLRPGGPPRLRITGIDFPQPGfrPAERVEETGRHLEEYCKRFNVPFEYKA-LAKKWDEIKLEDLDID 496 ****************************************************9*****************************.6*************** PP GRAS 198 pgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++E+l+Vn+ ++l++++de+v ++ +r++vL+l+k+++P+ +v+ +a +n++ F +rf eal ++s+ fd++ea++pre+e r++ E+e++gr+ CA06g25920 497 RDETLVVNCLYRLKNVHDETVVTHGnknPREAVLNLIKEINPHYFVHGIVNAMYNASFFTTRFREALFHFSSQFDMFEATMPREDEGRMTFEQEVFGRD 595 ******************99877655569********************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+nv+aceg+er+er e++++W+ r + aGF+++pl+++++k++k+ +++++ + v+e+s+++++gWk+r ++++S+W+ CA06g25920 596 IMNVIACEGTERVERPESYKQWSVRNQIAGFRQLPLDQDIVKEVKTKVKMFYHADFLVDEDSNWMLQGWKGRIMYALSVWE 676 ****************************************************888*************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.553 | 279 | 656 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.4E-106 | 306 | 676 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MNTSTHFPSD HRSSDRFEFC HRFALNNNLG IASDQFSRRG GGVGGGGVND VFCFPRSMPP 60 SDEELVIGSG SDRTVVEGDY FDGVFKYIQQ MLMEDQDDLE NRPCMFPDCI ALQAAEKSFY 120 DVLNPPPVHR DSPHFQDDAY RDAVNQFVES TSNADLDGDQ CSLLYASGLN NYHQAGAANS 180 GYVNSADANN YRQANEANGV NDQGVKSNKK HTREENGDTS KGGNSKQFAS NGAEETGDKE 240 AEEHYDKALL CPGMNPSFYE NRSKTATSLD NAAWDKQKSS HIKLSKRGRP RGTKNGMKKN 300 EVVDLTSLLT RCAEAAATYN SKTFIQVLDK IKQHSSPFGD ATARLAYYFA NALEARFAGG 360 DATLATSKRI SAAEFLKAYQ IYIAACPFKR MSNIFANKSI AKLTSASPRV HIIDFGILYG 420 FQWPCIIHGI SLRPGGPPRL RITGIDFPQP GFRPAERVEE TGRHLEEYCK RFNVPFEYKA 480 LAKKWDEIKL EDLDIDRDET LVVNCLYRLK NVHDETVVTH GNKNPREAVL NLIKEINPHY 540 FVHGIVNAMY NASFFTTRFR EALFHFSSQF DMFEATMPRE DEGRMTFEQE VFGRDIMNVI 600 ACEGTERVER PESYKQWSVR NQIAGFRQLP LDQDIVKEVK TKVKMFYHAD FLVDEDSNWM 660 LQGWKGRIMY ALSVWEPVHK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-45 | 305 | 675 | 5 | 374 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016577604.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | O80933 | 1e-159 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A1U8HB18 | 0.0 | A0A1U8HB18_CAPAN; Scarecrow-like protein 9 | ||||
TrEMBL | A0A2G2ZEI2 | 0.0 | A0A2G2ZEI2_CAPAN; scarecrow-like protein 14 | ||||
STRING | PGSC0003DMT400078286 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-161 | GRAS family protein |