PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g25910
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 859aa    MW: 95083.2 Da    PI: 6.6011
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g25910genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.7e-19316416199
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F++++  +++lv++
  CA06g25910 316 FEKVLSASDAGRIGRLVLPKACAEAYfpTINQSEGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSRID-PGGKLVIG 412
                 99**************************666667778***************9989999999***9.********************987.99999999 PP

                 EE-S CS
          B3  96 vfrk 99 
                 ++++
  CA06g25910 413 FRKA 416
                 9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-30312425IPR015300DNA-binding pseudobarrel domain
CDDcd100176.19E-24314415No hitNo description
SuperFamilySSF1019366.15E-21314418IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-16316416IPR003340B3 DNA binding domain
SMARTSM010192.9E-21316417IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42316417IPR003340B3 DNA binding domain
PROSITE profilePS5105014.107559609IPR011124Zinc finger, CW-type
PfamPF074963.0E-11564606IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MGSMICMNEL CRATTSSEWK KGWGFKSGGF AKLCYNCGSA FENFVFCETF HPDESGWREC  60
RTCRKRIHCG CIASKYLYEY LDYGGVACIL CARHLDGHST RPIQIPGDDL RNGTLGSKTA  120
QPLVVENKMD EHEFDRRRLM QLSKTGESSE PGQIFQTQKN LPIGNMSSCF SNLSQQPFGA  180
SLFGKPDTER PGQGVKDMYD SINQPSLNFS LSTPIGTSSS GQPFPGGDIE GREQSKASLF  240
QQSQRARHIL PKPPKPSPTS GSESIKAMAS PARIARPPAE GRGGRNQLLP RYWPRITDQE  300
LQQISGDLKS TVVPLFEKVL SASDAGRIGR LVLPKACAEA YFPTINQSEG LPIRIQDIKG  360
KEWTFQFRFW PNNNSRMYVL EGVTPCIQNM QLQAGDTVIF SRIDPGGKLV IGFRKATNNV  420
DVQSQTPNLT NGNGSAETSF SGMAENFPVS VYSSHLVFLQ SKYTHMLENG GRTSDDSMNR  480
QVPMSEKKKS RNIGSKNKRL LMHADDAMEL RITWEEIQEL FRPSPTAKST IVVIEDCEFE  540
EYEEPPVFGK RTIFTARSSG DQEQWAQCDS CSKWRRLPVH VLLPAKWTCS DNIWDSRRCS  600
CAAPDEINPR ELEALFSVGK DPKRRKLVET NEDCEPSGLD ALATLAVLGD NIGDLGEPSV  660
GATTKHPRHR PGCTCIVCIQ PPSGKGKHQP TCKCNVCLTV KRRFKTLMMR KKKKQSEREA  720
ELAQAKDQVP PKDESETDVI SGIELLQMNH SENELMNNSE NERNSNGDQA EEFAAGKGQL  780
DLNCDPNRDD DMLVEATAGM SMTSLVNAAN LPLEYLTQKG LESLGTSLLS QAAGESEDHH  840
PDNVFAKTAD AEPESKGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-682944232131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1619625KDPKRRK
2700711KRRFKTLMMRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2267260.0AC226726.1 Solanum lycopersicum chromosome 6 clone C06HBa0057D21, complete sequence.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577605.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2G2ZEP20.0A0A2G2ZEP2_CAPAN; Uncharacterized protein
STRINGSolyc06g082520.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]