PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CA06g25160

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 373aa MW: 41613.2 Da PI: 8.5466

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g25160	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.8e-06	135	158	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg++F ++ +L++H++ H CA06g25160 135 YPCTLCGEVFQSPIHLEQHQSIkH 158 99******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.076	135	159	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0026	135	158	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	137	158	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	8.15E-15	160	371	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.0E-6	161	276	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
Gene3D	G3DSA:3.90.228.10	5.8E-5	307	371	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MANTFFRPSF SSFFSTLFLL LHLGCFITSS SRKRKLSSQS HHDSPPPSSS RLKLSTTNPF 60 STSWSYIRRI FSSNKPNYPL QKANKPSSIP SPSSSTRSLQ KPISANDPIA HSVTPTPEAE 120 ITSDQLFLPL RNDIYPCTLC GEVFQSPIHL EQHQSIKHAI SELTDGDSGN NIVRIIFQTG 180 WPDKAAKNPN IRRILKIHNS KRILTRFEEY RESVKLKASR NAVVKRDERC AADGNELLRF 240 HCSTFMCELG QNGHSSICTQ QYCSVCGIIK SGFSHKMDGI SMQPTSWRGH VSVPEDIEEE 300 FGFMNVKRAM LVCRVIAGRV GCDPGYVDKE DSGYDSLVGS GNGVHTRLDE EDELLVFNSR 360 AVLPCFVIVY TV*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MANTFFRPSF SSFFSTLFLL LHLGCFITSS SRKRKLSSQS HHDSPPPSSS RLKLSTTNPF  60
STSWSYIRRI FSSNKPNYPL QKANKPSSIP SPSSSTRSLQ KPISANDPIA HSVTPTPEAE  120
ITSDQLFLPL RNDIYPCTLC GEVFQSPIHL EQHQSIKHAI SELTDGDSGN NIVRIIFQTG  180
WPDKAAKNPN IRRILKIHNS KRILTRFEEY RESVKLKASR NAVVKRDERC AADGNELLRF  240
HCSTFMCELG QNGHSSICTQ QYCSVCGIIK SGFSHKMDGI SMQPTSWRGH VSVPEDIEEE  300
FGFMNVKRAM LVCRVIAGRV GCDPGYVDKE DSGYDSLVGS GNGVHTRLDE EDELLVFNSR  360
AVLPCFVIVY TV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016577709.1	0.0	PREDICTED: uncharacterized protein LOC107875487
TrEMBL	A0A1U8HBC9	0.0	A0A1U8HBC9_CAPAN; uncharacterized protein LOC107875487
TrEMBL	A0A2G2ZE27	0.0	A0A2G2ZE27_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400078031	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11834	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-103	C2H2 family protein