PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g24700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 751aa MW: 85026.6 Da PI: 5.1087 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 353.8 | 2.6e-108 | 376 | 747 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+ v+++d + + L+++++++sp gd+ qRla++f+ +++arla+++++ly+al+p++ + +e+l+a+ ++ ++P+ k+s + aN CA06g24700 376 LRTLLVSCAQSVAADDRRTPYEQLKQIRQHCSPVGDAYQRLASVFADGIEARLAGTGTQLYAALAPKKIT---AAEKLKAYGVYLSACPFKKISIFFAN 471 6789****************************************************************99...9************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++I +++++++H iDf+i +G+QWp L+q L++ p+gpp+lRiTg++ p++g +e+le+tg+rLak++e+++vpfe+n+++ +++ed+++e+L++ CA06g24700 472 KMIFHTASNARTLHLIDFGILYGFQWPILIQLLSQMPDGPPKLRITGIDLPQPGfrPAESLEQTGSRLAKYCERFNVPFEYNAIAIQNWEDIKIEDLEL 570 *****************************************************9********************************************* PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +gE+laVn+ ++ ++llde+v l+s+rd+vL+l+++++P+++v + + +++++ F++rf eal +ys+lfd+++a+lpr++++r E+e+ +re++ CA06g24700 571 VSGETLAVNCLFRFENLLDETVVLDSPRDAVLSLIRKMNPDIFVQAVINGSYSAPFFVTRFREALFHYSTLFDMFDATLPRDDQQRLHFEQEFYRREAM 669 *************************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 nv+aceg+er+ r et+++W+ r ++aGFk +pl+e+ +++ ++ ++ + + + +e+ +++++gWk+r + + S+W CA06g24700 670 NVIACEGSERVVRPETYKQWQVRNMRAGFKLLPLNEQLMQKLRCKVKAGYHRDFVFDEDGKWMLQGWKGRVVCASSCW 747 ************************************************99999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.045 | 350 | 728 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.9E-106 | 376 | 747 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 751 aa Download sequence Send to blast |
MDPRFVPLPD PVYTFEFDDQ INLSSFEGSL NPPQSYYNDY VAFGVPYTAS SLDIGNFAPS 60 PNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPSMFHD PLALKAAEKS LYEALGKTYP 120 PSPYRTPYYV DHQLESPSPD SIFQTYSDHS TSSSNTHSNS TDPHWIVDPG KSRLPFGRSP 180 SEYSTQPLLQ SNSARSHVSL NNSTNLNVHM DSLLNPNVLS NVFTDSESML QFKRGMEEAN 240 KFLPNVSQFV IDLDKYTFPP KVEEVNKEAV VKAEKDERNH SPNDTKGRKH QYPEDSDYED 300 ERSNKQSAIY VEEEVELSEM FDRVLLCTDK GETICGDVKS EMAVDKSLDQ NGQAHGSNGG 360 KTRAKKQGTK TEAVDLRTLL VSCAQSVAAD DRRTPYEQLK QIRQHCSPVG DAYQRLASVF 420 ADGIEARLAG TGTQLYAALA PKKITAAEKL KAYGVYLSAC PFKKISIFFA NKMIFHTASN 480 ARTLHLIDFG ILYGFQWPIL IQLLSQMPDG PPKLRITGID LPQPGFRPAE SLEQTGSRLA 540 KYCERFNVPF EYNAIAIQNW EDIKIEDLEL VSGETLAVNC LFRFENLLDE TVVLDSPRDA 600 VLSLIRKMNP DIFVQAVING SYSAPFFVTR FREALFHYST LFDMFDATLP RDDQQRLHFE 660 QEFYRREAMN VIACEGSERV VRPETYKQWQ VRNMRAGFKL LPLNEQLMQK LRCKVKAGYH 720 RDFVFDEDGK WMLQGWKGRV VCASSCWVPA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 8e-42 | 359 | 749 | 1 | 379 | Protein SCARECROW |
5b3h_D | 8e-42 | 359 | 749 | 1 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016577766.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A1U8H2Q9 | 0.0 | A0A1U8H2Q9_CAPAN; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2G2ZDY3 | 0.0 | A0A2G2ZDY3_CAPAN; scarecrow-like protein 14 | ||||
STRING | Solyc06g076280.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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