PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g24030
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 672aa    MW: 74382.3 Da    PI: 5.5512
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g24030genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.9e-23116216198
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W +++i+r++++r++lt+GW+ Fv+ ++L +gD++vF   +++++ l
  CA06g24030 116 FAKTLTQSDANNGGGFSVPRYCAETIfptldlsADPPVQ--TVMAKDVHGEIWPFRHIFRGTPKRHLLTSGWSTFVNKKKLVAGDSIVFL--REESGAL 210
                 89****************************996555555..8************************************************..5589999 PP

                 EEEEE- CS
          B3  93 vvkvfr 98 
                 +v+++r
  CA06g24030 211 CVGIRR 216
                 ****98 PP
2Auxin_resp110.41.9e-36281361483
  Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  ast+++Fe+vY+Prast+eF+v++++v++a++v++++GmRfkmafeted s++++ +G ++ v+ +dpvrWp+S+Wr+L+
  CA06g24030 281 FASTGQPFEIVYYPRASTPEFCVRASSVNAAMSVQWCLGMRFKMAFETEDPSRISWfMGSISTVQVADPVRWPHSPWRLLQ 361
                 689****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-35110222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-27112219IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-20115216No hitNo description
PfamPF023621.1E-20116216IPR003340B3 DNA binding domain
SMARTSM010196.6E-21116218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633116218IPR003340B3 DNA binding domain
PfamPF065071.3E-31279361IPR010525Auxin response factor
PROSITE profilePS5174516.078585664IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MASEMEEVAE KCLDSELWHA CAGSMVQIPA VNSKVYYFPQ GHAEHTCTDV DFSALPRIPA  60
MILCRVDTVK FLADPKTDEI YAKIRLIPVL NNEHDFEDDT FFGSSVVETT EKPISFAKTL  120
TQSDANNGGG FSVPRYCAET IFPTLDLSAD PPVQTVMAKD VHGEIWPFRH IFRGTPKRHL  180
LTSGWSTFVN KKKLVAGDSI VFLREESGAL CVGIRRVKRG GIGGQETQSG WNLIAGNYGG  240
SYAYLKEDEK SSSNGNLNSS GGRFRDKGKV SPESVVRASY FASTGQPFEI VYYPRASTPE  300
FCVRASSVNA AMSVQWCLGM RFKMAFETED PSRISWFMGS ISTVQVADPV RWPHSPWRLL  360
QVTWDEPDLL QNVKHVNPWL VELVSNMPVI HLSPPRKRLC LPQECALDCQ FPLPSFSGNP  420
LGSSSPFGYQ PNNITAGIQG ARHAQFGDPL LDFQLSKKLQ LEVLPPVDAD SEIPNDISKV  480
QKESNEDLSS LLSMGISSQM LEKADDVKKP SFLLFGQPIL TEQQMSRVES TNAPPQVQTK  540
RDSSGEAQLK TEEISLGWKD FSECLSSASF LCNRGYHAAE LGAFIGHCKV FLDSEDRGRS  600
LDLSVLGSYA ELYKRLADMF ENERLDMMTI SVLYLDATGA SRQIGDEPFS DFIKTARRLT  660
VLRNPGNGTA R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-791338251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577837.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1U8H2Y90.0A0A1U8H2Y9_CAPAN; Auxin response factor
STRINGXP_009598798.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]