PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g23720
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 536aa    MW: 58489.1 Da    PI: 9.3895
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g23720genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-056789123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F r  nL+ H r H
  CA06g23720 67 FICEICNKGFQRDQNLQLHRRGH 89
                89*******************88 PP
2zf-C2H212.90.00032144166123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H + +
  CA06g23720 144 WKCEKCSKKYAVQSDWKAHTKIC 166
                 58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-76689No hitNo description
Gene3DG3DSA:3.30.160.601.4E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8456789IPR007087Zinc finger, C2H2
PfamPF121716.5E-56789IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355110109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.84E-7139164No hitNo description
SMARTSM00355130144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MMSDDGLSSL AFIQDPNSNL NSNPSGNNPN PNSNPSAKRK RNLPGKPDPD AEVVALSPKS  60
LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNK NEVIKKKVYI CPEKTCIHHD  120
PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHTKICGTRE YKCDCGTLFS  180
RKDSFITHRA FCDALAEESA RFTSVPSTAN LNFRNEILLN SGFGNNLQHS GNPQFGSNLF  240
RPEFMGLGLD PVISHQQQQL NNVDGHKPRL PLWLDNNMNP SPGNDFLVAS SSSTTSNLPH  300
HELVQIAGHN NNQQWFMNAG GGDDSGIGSS SSQLPSRVLL KEEEENKRNL SETISSMYYN  360
SHHNETTAPS ATHMSATALL QKAAQMGSTR SNSALFGTGF GLMGSSFSKS NGQGQFAAQD  420
QNFNGLMMNS PSTVSSLTTN ISNQGNRLLF GDMSSSSLEG GNASAKNSDP FNLMSRNKGK  480
QVNLSGNEPI EGGLTRDFLG VGGNESRPFL SKNELAKFGN ISGSAMGLSD YSGSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-37140205368Zinc finger protein JACKDAW
5b3h_F9e-37140205368Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577829.10.0PREDICTED: protein indeterminate-domain 9-like
TrEMBLA0A1U8HBP20.0A0A1U8HBP2_CAPAN; Zinc finger protein JACKDAW
TrEMBLA0A2G2ZDY00.0A0A2G2ZDY0_CAPAN; protein indeterminate-domain 9-like
STRINGPGSC0003DMT4000086940.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-105C2H2-like zinc finger protein