PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g19450

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 296aa MW: 32033.1 Da PI: 9.1112

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g19450	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.7e-14	91	135	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky CA06g19450 91 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 135 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.997	84	140	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-17	86	141	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-17	87	138	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	88	138	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-11	90	135	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-11	91	135	IPR001005	SANT/Myb domain
CDD	cd00167	1.60E-9	91	136	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MSSACGDESS ATEVTGAGEI MLFGVRVKVD PMRKSVSLNN LSQYEQPNIN NSGGDSKNES 60 LKVAADEGYA SADDAVQHQS NCGRERKRGV PWTEEEHKLF LLGLQKVGKG DWRGISRNFV 120 KTRTPTQVAS HAQKYFLRRS NLNRRRRRSS LFDITTDSVS AMPKVEGENK QEIPVLAPAT 180 LPTVETTKTN ALPVAPAVGP IMIPAQIDMS RDSPTLLRRD HGNSSMLVGA VPMFSLPNPS 240 PVIDLNANQN TTIEPSPLSL RLSLSLDQGQ ASSTRHLGYQ VMSSFSNGES IISVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-118	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016578317.1	0.0	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	1e-145	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A1U8H4D4	0.0	A0A1U8H4D4_CAPAN; Transcription factor MYB1R1
TrEMBL	A0A2G2ZCI8	0.0	A0A2G2ZCI8_CAPAN; transcription factor MYB1R1-like
STRING	PGSC0003DMT400083032	1e-143	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	1e-56	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]