PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g16160
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 526aa    MW: 58638.4 Da    PI: 8.1214
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g16160genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00017799123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F r  nL+ H r H
  CA06g16160 77 FFCEICNKGFQRDQNLQLHRRGH 99
                67*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.42E-67699No hitNo description
Gene3DG3DSA:3.30.160.605.0E-57699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.727799IPR007087Zinc finger, C2H2
PfamPF121712.7E-57799IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0447799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM0035595119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.5E-5142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.42E-6149174No hitNo description
SMARTSM00355150154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSILTSEEAA ASLSSCNMNN DTTTGAFCYP SRQHLATPQY QNSPQQIKKK RNQPGNPDPE  60
SEVIALSPKT LVATNRFFCE ICNKGFQRDQ NLQLHRRGHN LPWKLKKREN KEVVRKKVYI  120
CPELSCVHHD PSRALGDLTG IKKHYSRKHG EKKWKCEKCS KRYAVQSDCK AHFKTCGTRE  180
YKCECGTIFS RRDSFITHRA FCDTLAVENA RISASITGNP TILPSQMNLQ FQKPHYFNSH  240
DQIPATFSMK KEQPTSDFRH IDIPPWLMMT TNCQPFAGDG TASGSTPQNN FSSSSVFFPA  300
ATRLDQQYTH KDLNDLHDNP NPNLPEPRSG YHSTGESAAA SPHNISATAL LQKAGQFGAT  360
ISNKASAVVS AATYNTGPTL LMRQIPHNTH VSVTNTTASA TKQIHQNNLS SREEQMMTTS  420
TTITTTTGPA NISGIMTSFS NFANGFEGST TFEEDAILFS TGFTNLNSKK EDDDHQLYEE  480
DMTKDFLGLR PLSHTDHDIF NIAGLVNSTT EHDDDQFKIH KTWQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-31150214367Zinc finger protein JACKDAW
5b3h_F1e-31150214367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103116KLKKRENKEVVRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578572.10.0PREDICTED: protein indeterminate-domain 2-like
RefseqXP_016578573.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A1U8H5350.0A0A1U8H535_CAPAN; Protein indeterminate-domain 7
TrEMBLA0A2G2ZBG20.0A0A2G2ZBG2_CAPAN; protein indeterminate-domain 2-like
STRINGPGSC0003DMT4000125040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.12e-96indeterminate(ID)-domain 11