PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g07270

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bZIP

Protein Properties

Length: 327aa MW: 35953.6 Da PI: 7.5408

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g07270	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.1	2.2e-09	130	184	9	63
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 r NR +A rs +RK +i eLe+kv++L++e ++L +l ++ l++e+ CA06g07270 130 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLIQRDTTGLTNEN 184 5567**********************************99998887777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.9E-13	122	186	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-10	129	177	No hit	No description
PROSITE profile	PS50217	9.611	130	187	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-7	130	180	No hit	No description
CDD	cd14703	8.85E-21	130	176	No hit	No description
Pfam	PF00170	2.8E-7	130	177	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MSQAIRIPCV CCMENNQDTG ASLGVLTIRL DKVDPEISEG LLLVSYGPER ILSREQLSIS 60 TRDPTSTQES GSDLGLTPIP QPQPRPRIPI LDQDLRSNLD YLGQCQKSVV GFGGCNLDLR 120 QVPRVGSLVR ILANRQSAAR SKERKARYIS ELERKVQTLQ TEATTLSAQL TLIQRDTTGL 180 TNENTELKLR LQAMEQQAQL RDALNEALKQ EVERLKIATG QISASSDAYN SGMQQIPYNR 240 PAFFPHQPQP GPSESQNIQM PQFHHIQGSM SNPRHPLHAG HAQALADAMQ QDPLSRFQGL 300 DISSRGSHLV KTEVPSISAS QSSSTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	1e-147	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016575652.1	1e-137	PREDICTED: transcription factor RF2b-like
Swissprot	Q6S4P4	4e-66	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A1U8GWN3	1e-136	A0A1U8GWN3_CAPAN; Transcription factor RF2b
TrEMBL	A0A2G2Z8K9	1e-136	A0A2G2Z8K9_CAPAN; transcription factor RF2b-like
STRING	XP_009769625.1	1e-114	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	1e-63	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]