PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA05g20090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 508aa MW: 57488.1 Da PI: 7.5344 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.1e-30 | 85 | 142 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgy+WrKYGqK+vkgs+fprsYY+Ct+++Cpv+kkve++ +++v+ei+Y+g Hnh+k CA05g20090 85 DDGYTWRKYGQKHVKGSNFPRSYYKCTQQTCPVRKKVECAP-NGQVIEIVYNGPHNHPK 142 8****************************************.***************85 PP | |||||||
2 | WRKY | 105.8 | 2.3e-33 | 295 | 352 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vkg+++prsYY+CtsagC v+k+ver+++d k v++tYeg+Hnhe CA05g20090 295 EDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASDDLKSVITTYEGKHNHE 352 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-27 | 76 | 142 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.136 | 79 | 143 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-24 | 81 | 142 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-32 | 84 | 142 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-24 | 85 | 141 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-35 | 279 | 354 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-28 | 288 | 354 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.631 | 289 | 354 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-38 | 294 | 353 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-25 | 295 | 352 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 508 aa Download sequence Send to blast |
MEALEQLVKL LPCDQRVTHG FKLWKQPLPE LQDKTPTDNV AQILHCIEST NNQIPQQQQE 60 FTKKQNQFEQ RGIFSSSISP NNSSDDGYTW RKYGQKHVKG SNFPRSYYKC TQQTCPVRKK 120 VECAPNGQVI EIVYNGPHNH PKTQHLRRKA MDADSYVVGQ ENGSSSSSLI WRNDQQLEYN 180 KDVNSCCNEL ERKPSASVLS DVSSDPMLSN NLKSMNVFES DATHELSSTL NSFDDEDEDL 240 ATQEGNFLGD GINEFEFEPK RRKKESYSVE PSLLSRTVRE PKVVLQVESE TDILEDGYRW 300 RKYGQKVVKG NPNPRSYYKC TSAGCLVRKH VERASDDLKS VITTYEGKHN HEVPSANKTN 360 GVAGHFRSAS MLNNGQQQPA CTASRKSLKD SNIRVQFQDL PIPFERKFFM GSEYLRPNFG 420 ASYLSDLSFG GGSLQLPDFA IPLPLPSRMS FPARQNEPRL GDFQMNNHLL LPNGASTFLA 480 AGNTRHINDD NNNSRLLKAK DEVQYWT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-32 | 85 | 355 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-32 | 85 | 355 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 258 | 264 | PKRRKKE |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC238789 | 3e-53 | AC238789.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0142A20, complete sequence. | |||
GenBank | HG975444 | 3e-53 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 3e-53 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016573837.1 | 0.0 | PREDICTED: probable WRKY transcription factor 26 | ||||
TrEMBL | A0A1U8GRE1 | 0.0 | A0A1U8GRE1_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2ZKM9 | 0.0 | A0A2G2ZKM9_CAPAN; probable WRKY transcription factor 26 | ||||
STRING | PGSC0003DMT400060042 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5767 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38470.1 | 5e-66 | WRKY DNA-binding protein 33 |