PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 373aa MW: 42768.3 Da PI: 8.4767

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g17800	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.6	1.2e-06	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ sF r nL+ H r+H CA05g17800 58 YVCEICNLSFQREQNLQMHRRRH 80 9*********************9 PP
2	zf-C2H2	16.5	2.3e-05	136	157	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++C+k + +s++k Hi+t+ CA05g17800 136 ICQKCNKGYAVQSDYKAHIKTC 157 7*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.04E-5	57	80	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.6E-5	57	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	4.1E-6	57	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	9.9E-4	58	80	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.699	58	80	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	160	99	129	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.0E-4	126	156	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.04E-5	130	155	No hit	No description
SMART	SM00355	52	135	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MLASHSFLFG SPSNYSDQFS SPENGFIIKR KRRPAGTPDP DAQVVYLTAE MLMESDRYVC 60 EICNLSFQRE QNLQMHRRRH KVPWKLKKKM DQVIKKRVYV CPEPSCVHHD PCHALGDLVG 120 IKKHFRRKHS NYKQWICQKC NKGYAVQSDY KAHIKTCGTR GHSCDCGRVF SRVETFIEHQ 180 DSCKPQSSTT TTTTKECHDV QTTNPIFLPT TTTTTHHPHD QYSRILPNLD LELFTSPNYN 240 NQDTNYYSPF EQQNEHTPQS NMSSFVGQSH DNYIVQNNEA KNIIEEATTQ VSRLKSEANE 300 ILKIVMEEKA MAEEKRQEAK CLIELANLEM AKAREITQSI IGSSSSSHVM KIIKCSSCTN 360 LSNYLSSSIY RR*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MLASHSFLFG SPSNYSDQFS SPENGFIIKR KRRPAGTPDP DAQVVYLTAE MLMESDRYVC  60
EICNLSFQRE QNLQMHRRRH KVPWKLKKKM DQVIKKRVYV CPEPSCVHHD PCHALGDLVG  120
IKKHFRRKHS NYKQWICQKC NKGYAVQSDY KAHIKTCGTR GHSCDCGRVF SRVETFIEHQ  180
DSCKPQSSTT TTTTKECHDV QTTNPIFLPT TTTTTHHPHD QYSRILPNLD LELFTSPNYN  240
NQDTNYYSPF EQQNEHTPQS NMSSFVGQSH DNYIVQNNEA KNIIEEATTQ VSRLKSEANE  300
ILKIVMEEKA MAEEKRQEAK CLIELANLEM AKAREITQSI IGSSSSSHVM KIIKCSSCTN  360
LSNYLSSSIY RR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-16	133	183	5	55	Zinc finger protein JACKDAW
5b3h_F	2e-16	133	183	5	55	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-120	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016554132.1	0.0	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	1e-103	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A1U8F426	0.0	A0A1U8F426_CAPAN; protein SHOOT GRAVITROPISM 5-like
STRING	Solyc05g054030.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1022	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-103	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]