![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA05g16170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 231aa MW: 25946.9 Da PI: 8.9706 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.8 | 4.6e-33 | 122 | 180 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCt+++C vkk+vers +d+++v++tYeg+H+h+ CA05g16170 122 LDDGYKWRKYGQKAVKNSPFPRSYYRCTTTSCGVKKRVERSIQDTSIVVTTYEGTHTHS 180 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-33 | 107 | 182 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-29 | 114 | 182 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.354 | 117 | 182 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-37 | 122 | 181 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-26 | 123 | 179 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MFGGTHVDHQ DYDFITTTTS NSIFDLLMLP PHQPIITTST VQDSTISDQL INAPVTPNVS 60 SISSTSTELP ADDYQQEKKV NQQDGEQDQD KYKKQLKPKR KNQKGKREPR FAFMTKSEID 120 HLDDGYKWRK YGQKAVKNSP FPRSYYRCTT TSCGVKKRVE RSIQDTSIVV TTYEGTHTHS 180 CPVMPRGYAG VHPVTINYGV SIGAGDSGGR TYYGDSSLFS TNNLLQERRF * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-28 | 112 | 183 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-28 | 112 | 183 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001352739.1 | 3e-79 | probable WRKY transcription factor 48 | ||||
Swissprot | O22900 | 5e-50 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A2G3CHY0 | 1e-169 | A0A2G3CHY0_CAPCH; Putative WRKY transcription factor 23 | ||||
STRING | Solyc05g053380.2.1 | 1e-78 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49520.1 | 4e-44 | WRKY DNA-binding protein 48 |
Publications ? help Back to Top | |||
---|---|---|---|
|