PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA05g15010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 178aa MW: 20275 Da PI: 7.0177 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 169.1 | 5.1e-53 | 32 | 127 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdr+lPianv+rimkk+lP nakisk+aket+qecvsefisfvt+ea dkc++ekrkt+ngdd++wal++lGf+dyveplk yl+k+rele+e+ CA05g15010 32 KEQDRLLPIANVGRIMKKILPPNAKISKEAKETMQECVSEFISFVTGEACDKCHNEKRKTLNGDDICWALGSLGFDDYVEPLKRYLHKHRELESER 127 89*******************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-51 | 28 | 141 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.5E-40 | 34 | 148 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-27 | 37 | 101 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.7E-18 | 65 | 83 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 68 | 84 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.7E-18 | 84 | 102 | No hit | No description |
PRINTS | PR00615 | 3.7E-18 | 103 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MVDNNNINIL RSKYHKESSN YTSISEDNGV IKEQDRLLPI ANVGRIMKKI LPPNAKISKE 60 AKETMQECVS EFISFVTGEA CDKCHNEKRK TLNGDDICWA LGSLGFDDYV EPLKRYLHKH 120 RELESERMNQ NKCVIGVLGN NNIDQDQKER DESSTIPFKI TIMDHKGGNN FLPKTPY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-42 | 31 | 122 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-42 | 31 | 122 | 1 | 92 | Transcription factor HapC (Eurofung) |
5g49_A | 2e-42 | 31 | 122 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-153 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 1e-153 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004240535.2 | 8e-99 | nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | O82248 | 1e-55 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A2G2WGM1 | 1e-129 | A0A2G2WGM1_CAPBA; Nuclear transcription factor Y subunit B-1 | ||||
STRING | PGSC0003DMT400037958 | 3e-98 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47810.1 | 5e-58 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
---|---|---|---|
|