PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 505aa MW: 56090.3 Da PI: 9.3452

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g06690	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	62	82	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H CA05g06690 62 CEVCNKGFQREQNLQLHRRGH 82 *******************88 PP
2	zf-C2H2	13.4	0.00023	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ CA05g06690 137 FKCEKCSKKYAVQSDWKAHSKTC 159 89*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.08E-7	59	82	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.5E-6	59	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.97	60	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.025	60	82	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	180	102	132	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.0E-5	125	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.08E-7	132	157	No hit	No description
SMART	SM00355	93	137	157	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MRQEEELIQN HQEMLHQSHA HEAPTKKRRN QPGTPSKYLS SPDAEVIALS PKTLMATNRF 60 LCEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KNTKEVAKRK VYLCPEPTCI HHEPSRALGD 120 LTGIKKHYFR KHGEKKFKCE KCSKKYAVQS DWKAHSKTCG TREYRCDCGT LFSRRDSFIT 180 HRAFCDALVQ ETTKTFIPPT TTFNTLGMNN NQFLYGSSSN INLGNFSQLS NNNITKTTTS 240 TTTSAHRFGH HDNNLIGSSS NTNSFFHDQD YANNIKPMVH GLMQLPNLDQ NNDHTTNMFN 300 LNFFQNNSTN NLSTSGLLGD HHHNNNISCS IPSLYGTQIF ESSGAISSSG PTMSATALLQ 360 KAAQMGSSTT SNISTTASLL KAFGSTSGGS SSSGTKSDHQ ALNFGNEITV DGVINAYGAG 420 GSHEGYNNTT TKLNFEQQHQ GPLQKKQLTR DFLGVGEMVR SMSGRFGTQR EQQQQNDGLN 480 MMSSLLDSER NQIQQSFGSG PNFQ*

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MRQEEELIQN HQEMLHQSHA HEAPTKKRRN QPGTPSKYLS SPDAEVIALS PKTLMATNRF  60
LCEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KNTKEVAKRK VYLCPEPTCI HHEPSRALGD  120
LTGIKKHYFR KHGEKKFKCE KCSKKYAVQS DWKAHSKTCG TREYRCDCGT LFSRRDSFIT  180
HRAFCDALVQ ETTKTFIPPT TTFNTLGMNN NQFLYGSSSN INLGNFSQLS NNNITKTTTS  240
TTTSAHRFGH HDNNLIGSSS NTNSFFHDQD YANNIKPMVH GLMQLPNLDQ NNDHTTNMFN  300
LNFFQNNSTN NLSTSGLLGD HHHNNNISCS IPSLYGTQIF ESSGAISSSG PTMSATALLQ  360
KAAQMGSSTT SNISTTASLL KAFGSTSGGS SSSGTKSDHQ ALNFGNEITV DGVINAYGAG  420
GSHEGYNNTT TKLNFEQQHQ GPLQKKQLTR DFLGVGEMVR SMSGRFGTQR EQQQQNDGLN  480
MMSSLLDSER NQIQQSFGSG PNFQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	133	191	3	61	Zinc finger protein JACKDAW
5b3h_F	1e-33	133	191	3	61	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00256	DAP	Transfer from AT2G02080	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-179	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016572476.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q8GYC1	1e-123	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A1U8GMI6	0.0	A0A1U8GMI6_CAPAN; protein indeterminate-domain 5, chloroplastic-like
STRING	PGSC0003DMT400075837	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-100	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]