PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g06690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 505aa MW: 56090.3 Da PI: 9.3452 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 62 | 82 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H CA05g06690 62 CEVCNKGFQREQNLQLHRRGH 82 *******************88 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00023 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ CA05g06690 137 FKCEKCSKKYAVQSDWKAHSKTC 159 89*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.08E-7 | 59 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.5E-6 | 59 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.97 | 60 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.025 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 180 | 102 | 132 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.0E-5 | 125 | 158 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.08E-7 | 132 | 157 | No hit | No description |
SMART | SM00355 | 93 | 137 | 157 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MRQEEELIQN HQEMLHQSHA HEAPTKKRRN QPGTPSKYLS SPDAEVIALS PKTLMATNRF 60 LCEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KNTKEVAKRK VYLCPEPTCI HHEPSRALGD 120 LTGIKKHYFR KHGEKKFKCE KCSKKYAVQS DWKAHSKTCG TREYRCDCGT LFSRRDSFIT 180 HRAFCDALVQ ETTKTFIPPT TTFNTLGMNN NQFLYGSSSN INLGNFSQLS NNNITKTTTS 240 TTTSAHRFGH HDNNLIGSSS NTNSFFHDQD YANNIKPMVH GLMQLPNLDQ NNDHTTNMFN 300 LNFFQNNSTN NLSTSGLLGD HHHNNNISCS IPSLYGTQIF ESSGAISSSG PTMSATALLQ 360 KAAQMGSSTT SNISTTASLL KAFGSTSGGS SSSGTKSDHQ ALNFGNEITV DGVINAYGAG 420 GSHEGYNNTT TKLNFEQQHQ GPLQKKQLTR DFLGVGEMVR SMSGRFGTQR EQQQQNDGLN 480 MMSSLLDSER NQIQQSFGSG PNFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-33 | 133 | 191 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 1e-33 | 133 | 191 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00256 | DAP | Transfer from AT2G02080 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-179 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016572476.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic-like | ||||
Swissprot | Q8GYC1 | 1e-123 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A1U8GMI6 | 0.0 | A0A1U8GMI6_CAPAN; protein indeterminate-domain 5, chloroplastic-like | ||||
STRING | PGSC0003DMT400075837 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 1e-100 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
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