PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g23500

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 674aa MW: 76571.4 Da PI: 7.7258

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g23500	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.7	1.9e-28	34	120	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r+s+ ++s r+++it+r++vCskeg++ + +++ +rr+r ++r+gCka+l +kk+ +gkw v+k+++eHnH+l+p CA04g23500 34 FYNSYARRLGFGTRVSAYRRSLRDNTITTRHLVCSKEGFNPKPDNA---KRRQRIVSRVGCKAHLALKKQASGKWAVSKFVKEHNHDLVP 120 9**************************************99888...9***********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-25	34	120	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-26	238	328	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.781	522	554	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.9E-10	524	553	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-9	529	556	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence Send to blast
MEDNDSSGLD LEQQCELEPY EGMEFESEQA ARIFYNSYAR RLGFGTRVSA YRRSLRDNTI 60 TTRHLVCSKE GFNPKPDNAK RRQRIVSRVG CKAHLALKKQ ASGKWAVSKF VKEHNHDLVP 120 PDQVHLIRSH RHISGPARSL IDTLQAAGLG ATGVMSVLIK QSGGISNVGF TKADCQNYMN 180 QSRQRTLGSS AQYIFDNLKQ KQAEDPDFFY AVQGGSSGNI FWADSTSRRN YSYFGDTVTF 240 DTAYRTHRYR VPFAPFIGVN HHCQPVLFGC ALLLNESESS FIWLFQNWLA AMSGRHPVSI 300 TTDHDRIIRS AIVDVFPGAR HRFCKSNIFR EAQERLSHSL QSFPTFEAEF QKCVNLTETI 360 EEYELCWGSL LGRYNVIDDE WLQSMYDARQ QWVPVYLQDT FFGETSIAKT SDNTNSYFDG 420 FIDASTNIHV LMSQYEKATA NRHEKEVKAE YDTINIAPIL KTPSPMEKQA ANIYTREIFL 480 MFQQELMETL AYPATVIKDT GSDVIYQVAK FGEDHKVNYV QYNVFEKKAS CSCQLFDFSG 540 ILCRHILAVF RVKNVLRLPS HYVLKRWTRK AKSDIVLDED KLGSPSSHNN SFTDRFEKLN 600 LEATKYVKEG VDSKNVYLVA MDALREASKK VAAAVYGTPA LPLNQDMNKA KDFNLNGNQT 660 GCDDSSLLVI FFL*

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence Send to blast

MEDNDSSGLD LEQQCELEPY EGMEFESEQA ARIFYNSYAR RLGFGTRVSA YRRSLRDNTI  60
TTRHLVCSKE GFNPKPDNAK RRQRIVSRVG CKAHLALKKQ ASGKWAVSKF VKEHNHDLVP  120
PDQVHLIRSH RHISGPARSL IDTLQAAGLG ATGVMSVLIK QSGGISNVGF TKADCQNYMN  180
QSRQRTLGSS AQYIFDNLKQ KQAEDPDFFY AVQGGSSGNI FWADSTSRRN YSYFGDTVTF  240
DTAYRTHRYR VPFAPFIGVN HHCQPVLFGC ALLLNESESS FIWLFQNWLA AMSGRHPVSI  300
TTDHDRIIRS AIVDVFPGAR HRFCKSNIFR EAQERLSHSL QSFPTFEAEF QKCVNLTETI  360
EEYELCWGSL LGRYNVIDDE WLQSMYDARQ QWVPVYLQDT FFGETSIAKT SDNTNSYFDG  420
FIDASTNIHV LMSQYEKATA NRHEKEVKAE YDTINIAPIL KTPSPMEKQA ANIYTREIFL  480
MFQQELMETL AYPATVIKDT GSDVIYQVAK FGEDHKVNYV QYNVFEKKAS CSCQLFDFSG  540
ILCRHILAVF RVKNVLRLPS HYVLKRWTRK AKSDIVLDED KLGSPSSHNN SFTDRFEKLN  600
LEATKYVKEG VDSKNVYLVA MDALREASKK VAAAVYGTPA LPLNQDMNKA KDFNLNGNQT  660
GCDDSSLLVI FFL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016568196.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1U8GA54	0.0	A0A1U8GA54_CAPAN; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2G2ZSZ0	0.0	A0A2G2ZSZ0_CAPAN; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009798613.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]