PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g23120
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family BBR-BPC
Protein Properties Length: 305aa    MW: 33966.8 Da    PI: 10.1379
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g23120genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind372.85.9e-114730420301
   GAGA_bind  20 lkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqq.lse. 116
                 +     +q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erdn++++l+++e s+     +g q+++g+k++++ qq +++ 
  CA04g23120   7 M-----KQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRESSM-----SGGQIVRGVKHMHHPQQhVHHq 95 
                 4.....49***********************************************************99984.....5778************964555 PP

   GAGA_bind 117 pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesader...........................s 187
                 +++ +++++ r+ +++ea p++  a+e ++ +++k+ +++k +  +k+  k+ kk + ++++ ++     +                            
  CA04g23120  96 QHMVEPTYNPRDVHINEAIPVSPPAPEPTKPRRNKRAKEPKAAPCPKKApKASKKVKRETEDLNQT----TfsksqewkgaqemaggasddlnrqlavP 190
                 889999999*************99999888887776666554322222212222222222222222....022234578999***************99 PP

   GAGA_bind 188 kaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLk 286
                 k ++k++dl+ln+v++De+t+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yPLP+++++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLk
  CA04g23120 191 KPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLK 289
                 *************************************************************************************************** PP

   GAGA_bind 287 dhWAkHGtnkfvtir 301
                 +hWAkHGtn+++ti+
  CA04g23120 290 NHWAKHGTNRYITIK 304
                 **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.6E-1461304IPR010409GAGA-binding transcriptional activator
PfamPF062171.1E-1023304IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MQHQPSMKQI MAIMAERDAA IQERNLALSE KKAALAERDM AILQRDSAIA ERNNAIMERD  60
NAIATLQYRE SSMSGGQIVR GVKHMHHPQQ HVHHQQHMVE PTYNPRDVHI NEAIPVSPPA  120
PEPTKPRRNK RAKEPKAAPC PKKAPKASKK VKRETEDLNQ TTFSKSQEWK GAQEMAGGAS  180
DDLNRQLAVP KPDWKDQDLG LNQVAFDETT MPVPVCSCTG VLRPCYKWGN GGWQSSCCTT  240
NLSMYPLPAV PNKRHARIGG RKMSGSAFTK LLSRLAAEGH DLSNPVDLKN HWAKHGTNRY  300
ITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823140.0FJ982314.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568450.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_016568451.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_016568452.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_016568453.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_016568454.10.0PREDICTED: protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-128BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A1U8GAS90.0A0A1U8GAS9_CAPAN; protein BASIC PENTACYSTEINE6
TrEMBLA0A1U8GAV90.0A0A1U8GAV9_CAPAN; Protein BASIC PENTACYSTEINE6
TrEMBLA0A2G2X1870.0A0A2G2X187_CAPBA; Protein BASIC PENTACYSTEINE6
STRINGXP_009798749.10.0(Nicotiana sylvestris)
STRINGXP_009610156.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53532338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-112basic pentacysteine 6