PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g23110
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bZIP
Protein Properties Length: 459aa    MW: 49579.5 Da    PI: 8.677
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g23110genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-10313363555
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                 kr++r   NR++A rs +RK+ +i eLe kv++L++e ++L  ++  l+k 
  CA04g23110 313 KRAKRILANRLSAARSKERKLRYISELEHKVQKLQSEATTLSTQVTILQKD 363
                 9****************************************9999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.3E-15309373IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.013311374IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.9E-11313367No hitNo description
PfamPF001702.8E-9313364IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.01E-11313367No hitNo description
CDDcd147038.54E-21314363No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAQSNSKPPM SSHNFGVGGS HVRSLSQPGI FSNSCLPPLS PLPPPSESSM ALVQSSLKDT  60
SMEEVDVNSK GVGVVSSFTR DGLPPRKGHR RSNSDVPLGF SAMIQSSPQL MPIGVQKVFG  120
RAVSLGDSLG RDKFTGRNGK IDGEEIGERK PKGEITDELL FSYMNLDNID ALNSSGTEDR  180
DKDSMVSGTK VSGCDSSNNE AESVLKGNTV SIQPTGLREG FKRSADANIA PAARHFRSLS  240
MDSAIGNFHY GDESPNLPNS LVMRSGQLSP SNSGNESSSK HNFDFGNAEF SEAEMKKIMA  300
DERLAEIAVS DPKRAKRILA NRLSAARSKE RKLRYISELE HKVQKLQSEA TTLSTQVTIL  360
QKDLVEISSL NSELKFRIQS MEQQAQLRDA LHESLTAEVQ RLKLAAGELR EEGRSPGSTT  420
QQSPAKHNMF QMQRQQPSQM QQLSVGKASA TSATPASA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0128330.0BT012833.1 Lycopersicon esculentum clone 113887F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568457.10.0PREDICTED: transcription factor VIP1-like
RefseqXP_016568458.10.0PREDICTED: transcription factor VIP1-like
RefseqXP_016568459.10.0PREDICTED: transcription factor VIP1-like
TrEMBLA0A1U8GAT50.0A0A1U8GAT5_CAPAN; transcription factor VIP1-like
TrEMBLA0A1U8GIA40.0A0A1U8GIA4_CAPAN; Transcription factor RF2a
STRINGPGSC0003DMT4000095380.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12652478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.38e-94bZIP family protein