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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g21130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | DBB | ||||||||
Protein Properties | Length: 245aa MW: 26925.4 Da PI: 6.929 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.4 | 2.9e-08 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++ +e+++fC ++ lC++C H+ H+ CA04g21130 4 QCDVCNTNEATFFCVADEAALCNTCDHRVHHAnklagkHQ 43 7******99******************9964446777776 PP | |||||||
2 | zf-B_box | 29.5 | 1.6e-09 | 54 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + + C+ ++e ++ lfC++++ lC++C +++Hk Ht CA04g21130 54 QVPLCDICQERRAFLFCQQDRAILCRECDVSIHKAneHT 92 6789*****************************878865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.722 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.21E-5 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.3E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-6 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.6E-16 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.537 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.3E-8 | 54 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.37E-9 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MKIQCDVCNT NEATFFCVAD EAALCNTCDH RVHHANKLAG KHQRFSLLQP SAKQVPLCDI 60 CQERRAFLFC QQDRAILCRE CDVSIHKANE HTQKHNRFLL TGVTISTNSS LYTSSESPSV 120 TSSTTNQDSA TNVNKSQTCN KKPLPFDVSV SGSVSSSIIA QEVSVAANVG ENGYTSSISE 180 YLEMLPGWHV EEFLNCSTIP TNGFCKVCIL CSFPSFITIV NWLCEGASHG DSFFQKCRIK 240 TAYN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-57 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571421.1 | 1e-150 | PREDICTED: B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 2e-67 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1U8GJF9 | 1e-149 | A0A1U8GJF9_CAPAN; B-box zinc finger protein 21-like | ||||
STRING | Solyc04g081020.2.1 | 1e-116 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1463 | 23 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-63 | salt tolerance homolog2 |