PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g19550
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 580aa    MW: 64407.1 Da    PI: 7.4168
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g19550genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64e-1719951799
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 +p kf++++++    s t +l  +sg+sW v l   +++++ ++ +GW +Fvk++ +++gD++vF+  ++ + +++v+vf++
  CA04g19550 19 KVPSKFTKHIEER--ASGTAVLVGPSGNSWHVDL--IQQDDGLFFHNGWASFVKDHCIEAGDSLVFR--DDGDLHFTVQVFDE 95
                589****777744..5669***************..99999**************************..44777789**9986 PP
2B352.68.3e-17252346198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f kv+++ + + s  l +p +fa+e+   +++++++ l +++g++W+v+ i  ++ + ++++ +GW +Fv++n+++ gD+++F+l+++ e   +v+v+r
  CA04g19550 252 FTKVMKRFNISGSYTLHIPYQFATEYL--PNCKVKILLHNLKGKTWTVNSIPtTRVQTSHTFCGGWLSFVRENNIDLGDICIFELVRECEL--RVRVLR 346
                 677777777788889***********6..45999****************77566666699************************985555..888877 PP
3B348.31.8e-15469563198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f+ ++++ +v+ s  l +p +f  eh   +++ ++++l +++g+ W+v+ i + k ++ +++ +GW+ Fv++n+++ gD+++F+l+g  + e++v+++ 
  CA04g19550 469 FVRIMKKFNVSGSYTLKVPYRFSMEHL--PNCRTEIVLHNLKGECWTVNSIPTVKVQTlHTFCGGWSAFVRENDIQMGDICIFELIG--KYEMRVHICA 563
                 556677778888999*******99996..45889****************99888888999************************99..5667899985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.366396IPR003340B3 DNA binding domain
CDDcd100171.58E-16494No hitNo description
SMARTSM010191.4E-81496IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-201698IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-201897IPR015300DNA-binding pseudobarrel domain
PfamPF023628.2E-152095IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-24245346IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-22246346IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-19250346No hitNo description
SMARTSM010199.5E-16252348IPR003340B3 DNA binding domain
PROSITE profilePS5086313.761252348IPR003340B3 DNA binding domain
PfamPF023621.1E-14252346IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-22463562IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-23464562IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-19467562No hitNo description
PROSITE profilePS5086312.703469565IPR003340B3 DNA binding domain
SMARTSM010191.7E-11469565IPR003340B3 DNA binding domain
PfamPF023626.0E-13469563IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MVGKLLHSSS TVLIFILQKV PSKFTKHIEE RASGTAVLVG PSGNSWHVDL IQQDDGLFFH  60
NGWASFVKDH CIEAGDSLVF RDDGDLHFTV QVFDESSCEK EAAYNADCSQ GATNLYNLAL  120
KKRDRGNSVL LDCIVEGVPK KMRSTQNPSE CTSSQDTHEL AFSKDGYTPE DAGRDYVASF  180
LDEMENAGDA LDNTVTIAVP SQAMVVFDNP VMHLESKAEV KIGSGTSEED MWLPAQEAEK  240
VARLFTSSFP SFTKVMKRFN ISGSYTLHIP YQFATEYLPN CKVKILLHNL KGKTWTVNSI  300
PTTRVQTSHT FCGGWLSFVR ENNIDLGDIC IFELVRECEL RVRVLRVERE GNGYSSKAVH  360
EGLAADYAKI SGSKSRKVGA NSNHCSQQVV KAMKYDKKGS NHDKGHHGNM LKNHQLHCQS  420
KISSGDSAIR KPTSSQDKQG SFTKSCMSMK SVPEEKLAAE SFVSNFPRFV RIMKKFNVSG  480
SYTLKVPYRF SMEHLPNCRT EIVLHNLKGE CWTVNSIPTV KVQTLHTFCG GWSAFVREND  540
IQMGDICIFE LIGKYEMRVH ICANGVIADQ SAIVVSLTS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145240.0CU914524.3 S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence.
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568698.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_016568699.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A1U8GKT10.0A0A1U8GKT1_CAPAN; B3 domain-containing protein Os01g0723500-like isoform X1
STRINGSolyc04g079590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-15B3 family protein