PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g19000

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 284aa MW: 32388.6 Da PI: 10.1843

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g19000	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53	6.1e-17	186	269	3	92
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +++ps+v+ +l lp +f++++ ++++ t+tl de g+++ + +k++ l++GWk+F+ +++L +gD +vF+l++ ++f+ CA04g19000 186 RTMLPSHVSGGFWLGLPSNFCRKNL--PRRDDTITLIDEMGEEFPTVYLAQKNG----LSGGWKRFAVDHDLADGDCIVFHLIRPTKFKV 269 5799***************9995..346679***********555555....9*********************99777743 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.06E-23	177	271	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.7E-19	178	271	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.02E-23	182	271	No hit	No description
SMART	SM01019	3.1E-19	184	275	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.406	184	275	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-14	186	269	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MGGWGVVRDC SAIPTVEFAL LSIKKKYTEF FYQNPSSSST LFSSISCKTI TRNTKTKKMV 60 KYEEIRQQRL EENKKRMEEL NLPLLTQALK NSTSPKPSPM KKTKPRIMGT ELVAVRRSPR 120 VAKSPAPEYK EVIYYERVMI PRRLATPTKR DRLNFAYATD EERAASIEKA EKLEASLGSD 180 YPALVRTMLP SHVSGGFWLG LPSNFCRKNL PRRDDTITLI DEMGEEFPTV YLAQKNGLSG 240 GWKRFAVDHD LADGDCIVFH LIRPTKFKVT LPNHVWKFII EHL*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975516	3e-61	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016568750.1	1e-156	PREDICTED: B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	3e-66	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A1U8GC90	1e-154	A0A1U8GC90_CAPAN; B3 domain-containing protein
TrEMBL	A0A2G2ZRP6	1e-154	A0A2G2ZRP6_CAPAN; B3 domain-containing protein At5g42700-like
TrEMBL	A0A2G3CJK5	1e-154	A0A2G3CJK5_CAPCH; B3 domain-containing protein
STRING	Solyc04g079130.2.1	1e-139	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-62	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]