PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g13060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23022 Da PI: 6.534 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.9 | 4.2e-21 | 28 | 77 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49 k+i n+ r+vtf kRr g++KKA+EL++LC++e+a+i+ s ++++l+++ CA04g13060 28 KPIANQNSRHVTFFKRRSGLFKKASELCILCGVEIAIIVQSlKRQRLFTF 77 689*************************************9567889888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.549 | 20 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-23 | 20 | 80 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-24 | 21 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-12 | 22 | 42 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-21 | 30 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-12 | 42 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-12 | 57 | 78 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MNMNNTDAVN STAMNVKKTQ GRRKIAMKPI ANQNSRHVTF FKRRSGLFKK ASELCILCGV 60 EIAIIVQSLK RQRLFTFGHP SADAIIDRYL SGKSASDQQF SFVQQNNEYF SQISRELDEE 120 EIIDESKRVN GNNNGFWWNE SIDDMGIEDL DKFVDALEEL KKRVNMRVDE LNMIKGSSSL 180 PSTSTMNQAI DYCASVVPFD FN* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571618.1 | 1e-149 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1U8GS82 | 1e-148 | A0A1U8GS82_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2ZPF2 | 1e-148 | A0A2G2ZPF2_CAPAN; agamous-like MADS-box protein AGL62 | ||||
STRING | PGSC0003DMT400063794 | 1e-91 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-35 | AGAMOUS-like 62 |