PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g09370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ARF | ||||||||
Protein Properties | Length: 342aa MW: 37604.6 Da PI: 7.3924 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.3 | 3.3e-24 | 114 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+ltpsd+++ g +++p+ +a+++ ++ + l+++d +g +We+++iyr++++r++lt+GW++Fv++++L +gD+ vF +++ +++el CA04g09370 114 FVKILTPSDANNGGGFSVPRFCADSIfprlnfvADPPVQ--NLVIRDIHGSEWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVSGDSAVFIRKN-RTGEL 209 89*********************999*****98767777..5************************************************654.88999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ CA04g09370 210 YVGVRRA 216 ****996 PP | |||||||
2 | Auxin_resp | 79.7 | 7.1e-27 | 249 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ +++Fev +Pr +++Fvvk+e ve++ ++ ++vG+R+kma+etedss++ + +Gtv++v ++ W++S+Wr+L+ CA04g09370 249 AAEMAARGMPFEVSCYPRPDWANFVVKAEAVEASSNMFWTVGTRVKMAVETEDSSRTACfQGTVSSVILPENGPWRGSPWRMLQ 332 688999****************************************************99**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-32 | 106 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-28 | 109 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-22 | 113 | 215 | No hit | No description |
SMART | SM01019 | 9.0E-20 | 114 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.999 | 114 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-22 | 114 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-24 | 249 | 332 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MQPPTAAAGN DVDPTIWRAI AGNSVRIPAV GSRAYYFPQG HAEHASSTSP VLLSGVIPPF 60 ILCRVLSVRF LADAVTDEAF AKIFLVPVNQ CYGNDVTTVN VDEEEDVEKE VVSFVKILTP 120 SDANNGGGFS VPRFCADSIF PRLNFVADPP VQNLVIRDIH GSEWEFRHIY RGTPRRHLLT 180 TGWSKFVNSK KLVSGDSAVF IRKNRTGELY VGVRRAIRGN ENCQRWTSTL LKREQTSSSG 240 SNGEAVKEAA EMAARGMPFE VSCYPRPDWA NFVVKAEAVE ASSNMFWTVG TRVKMAVETE 300 DSSRTACFQG TVSSVILPEN GPWRGSPWRM LQVTYDSVAF C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 2e-63 | 16 | 336 | 23 | 336 | Auxin response factor 1 |
4ldy_B | 2e-63 | 16 | 336 | 23 | 336 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016569868.1 | 0.0 | PREDICTED: auxin response factor 17 | ||||
Refseq | XP_016569869.1 | 0.0 | PREDICTED: auxin response factor 17 | ||||
Refseq | XP_016569870.1 | 0.0 | PREDICTED: auxin response factor 17 | ||||
Refseq | XP_016569871.1 | 0.0 | PREDICTED: auxin response factor 17 | ||||
Refseq | XP_016569873.1 | 0.0 | PREDICTED: auxin response factor 17 | ||||
Swissprot | Q84WU6 | 1e-120 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A2G2ZNR1 | 0.0 | A0A2G2ZNR1_CAPAN; Auxin response factor | ||||
STRING | XP_009791106.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9560 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-118 | auxin response factor 17 |