PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g01800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 22960 Da PI: 9.4718 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.6e-18 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp + +++lg+f+ta eAa a++aa+ +++g CA04g01800 21 HYRGVRKRP-WGRYAAEIRDP-----HrkCQVWLGTFDTAVEAAMAYDAAAIEFRG 70 6********.**********6.....336***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.4E-34 | 21 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-12 | 21 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.471 | 21 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-21 | 21 | 79 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 21 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.48E-21 | 21 | 79 | No hit | No description |
PRINTS | PR00367 | 1.6E-9 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MARRHRRTAA AVAIAAEKEV HYRGVRKRPW GRYAAEIRDP HRKCQVWLGT FDTAVEAAMA 60 YDAAAIEFRG VKAKTNFPIP IDVTRSPSEV STVESSTAMT KMKKVEVPEE LVIVESSPLS 120 LDLTLGRSSY CLGSKLFSSQ AQNHLNARGG GSGLDRGEMF HTNRFRSIIM GSDAGDLSES 180 DSSSVVDFIG NNTKDIQIDL NFPSVPKNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 18 | 82 | 2 | 67 | ATERF1 |
3gcc_A | 1e-21 | 18 | 82 | 2 | 67 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571759.1 | 2e-81 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A2G2ZLH2 | 1e-154 | A0A2G2ZLH2_CAPAN; Ethylene-responsive transcription factor 4 | ||||
STRING | XP_009618542.1 | 8e-42 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 6e-26 | erf domain protein 9 |