PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g36390
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 537aa    MW: 57918.8 Da    PI: 8.8653
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g36390genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0596118123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k F r  nL+ H r H
  CA03g36390  96 FVCEICNKGFQRDQNLQLHRRGH 118
                 89*******************88 PP
2zf-C2H213.30.00025172194123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k++  +s+ k H +t+
  CA03g36390 172 WKCEKCSKRYAVQSDWKAHSKTC 194
                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-695118No hitNo description
Gene3DG3DSA:3.30.160.601.8E-595118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94996118IPR007087Zinc finger, C2H2
SMARTSM003550.01796118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SMARTSM00355250137167IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4160193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.16E-6167192No hitNo description
SMARTSM00355130172192IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MMKGLMNQQV PGVVEENMSN LTSASGEASV SSSNRNDNNN TTGGIYPPQY TFAPPIQQAQ  60
PAQQQIKKKR NQPGNPDPDA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRTSK EIRKKVYVCP ETSCVHHDPA RALGDLTGIK KHFCRKHGEK KWKCEKCSKR  180
YAVQSDWKAH SKTCGTKEYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITGNPILPTP  240
STSHMNFQFQ PFNAEIPVTF SLKKEQQTGF NLRPEIPSWL LVGGGGGPGP GPGPPPPSPI  300
ELSSSIFQSS RFGDQDYAQN HQQQGFMNPN PSLSGPTSGA MASSSPHISA TALLQKAAQM  360
GATMSNKAST VSAAAALGPA MLVRPHQIHV SSSATATESV NNATDFGLNL SSREDLTSGF  420
FNSLASYGNK AATATASAVV AHATMPVSTP TPSSLNDMMN SFSSTTPTGF EGSNFDDPFS  480
SIGILNPKNG NGDGNDDMTK DFLGLRPLSH SDIFNIAGLV NTSNENQSQN HKTWQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35168229364Zinc finger protein JACKDAW
5b3h_F5e-35168229364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122134KLKQRTSKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136590.0BT013659.1 Lycopersicon esculentum clone 132478R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562559.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_016562560.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-122IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A1U8FUP50.0A0A1U8FUP5_CAPAN; protein indeterminate-domain 7-like
TrEMBLA0A1U8G3J90.0A0A1U8G3J9_CAPAN; Protein indeterminate-domain 7
STRINGSolyc03g121660.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-112C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]