PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g36360

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 738aa MW: 84537.8 Da PI: 7.4101

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g36360	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.6	6.8e-26	28	115	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fY+eYAk+ GF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vkk++ +gkw+++++ +eHnHel p CA03g36360 28 EFYKEYAKSEGFGTAKLSSRRSRATKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKKRSsNGKWYIHSFIKEHNHELLP 115 6**************************************999877....9****************9**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-23	28	115	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.7E-21	228	320	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.2	508	544	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.9E-7	518	542	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-7	519	546	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence Send to blast
MEPNVGLGNS NVEPRDDMEF DTHEAAYEFY KEYAKSEGFG TAKLSSRRSR ATKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKKRSSNGKW YIHSFIKEHN HELLPAQVHF 120 FRSHRNVDPL NNDAKVRRKK MLAPVSKQYV AYQFSGNLEN LFRNQNDRGR SLSLEEGDAQ 180 ILLELFVHMQ EENPRFFYAV DLNEEHRLRN VFWVDAKGID SYSKFGDVVS FDTTYFTNKY 240 KIPLVLFIGA NHHVQPTLLG CALIADETVH TLIWLMRTWC LAMGGRGPRI LLSDQNDNIK 300 AAVGAVLPDT QLYFSLWSIL EKIPRCLDYL SMWHELFMAK FSKCIYKSWT EGQFEHRWWK 360 LIEKFNLRED EWVQLLYEDR KLWVPSFMRD VSFASLSMAS RTESLNSFFD KYIQSETSLR 420 DFIGQHKLIL EDWYEEEAKA NFDAWHEMPE LKTPSPFEKQ MLLIYTHEIF KKFQVEVLGA 480 AACHLKKESE DGTSITYSVK DFDANQDFMV EWDAPRSDIC CSCHSFEYKG YLCRHAIVVL 540 QMSGLFNIPS KYILQRWTNV ATSRRPIGER LDDVQAKVRR YNDLCRRAII LGEEGSLTQE 600 SYNIAVGALK EALKQCATVN VTSEANLRSG STATLAIQDV DEQRATVNVT SEVNLKSGST 660 ATHAIQDVDV VCQGNTSAAR VPGSCSKAAQ TSKGSKRADP ENEMAVNNNT SNKKGKVRNF 720 YFTCPFLYLF FSATSSP*

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence Send to blast

MEPNVGLGNS NVEPRDDMEF DTHEAAYEFY KEYAKSEGFG TAKLSSRRSR ATKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKKRSSNGKW YIHSFIKEHN HELLPAQVHF  120
FRSHRNVDPL NNDAKVRRKK MLAPVSKQYV AYQFSGNLEN LFRNQNDRGR SLSLEEGDAQ  180
ILLELFVHMQ EENPRFFYAV DLNEEHRLRN VFWVDAKGID SYSKFGDVVS FDTTYFTNKY  240
KIPLVLFIGA NHHVQPTLLG CALIADETVH TLIWLMRTWC LAMGGRGPRI LLSDQNDNIK  300
AAVGAVLPDT QLYFSLWSIL EKIPRCLDYL SMWHELFMAK FSKCIYKSWT EGQFEHRWWK  360
LIEKFNLRED EWVQLLYEDR KLWVPSFMRD VSFASLSMAS RTESLNSFFD KYIQSETSLR  420
DFIGQHKLIL EDWYEEEAKA NFDAWHEMPE LKTPSPFEKQ MLLIYTHEIF KKFQVEVLGA  480
AACHLKKESE DGTSITYSVK DFDANQDFMV EWDAPRSDIC CSCHSFEYKG YLCRHAIVVL  540
QMSGLFNIPS KYILQRWTNV ATSRRPIGER LDDVQAKVRR YNDLCRRAII LGEEGSLTQE  600
SYNIAVGALK EALKQCATVN VTSEANLRSG STATLAIQDV DEQRATVNVT SEVNLKSGST  660
ATHAIQDVDV VCQGNTSAAR VPGSCSKAAQ TSKGSKRADP ENEMAVNNNT SNKKGKVRNF  720
YFTCPFLYLF FSATSSP*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016562564.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4
Refseq	XP_016562565.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4
Refseq	XP_016562566.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4
Refseq	XP_016562567.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A1U8FTT3	0.0	A0A1U8FTT3_CAPAN; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A2G2XXD6	0.0	A0A2G2XXD6_CAPAN; protein FAR1-RELATED SEQUENCE 4
STRING	XP_009785478.1	0.0	(Nicotiana sylvestris)
STRING	XP_009600660.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]