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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g32220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 19782.4 Da PI: 8.702 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H CA03g32220 67 FSCNYCQRKFYSSQALGGHQNAH 89 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.86E-7 | 64 | 94 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 67 | 94 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MEVQASEQIS NNNQTTQDDQ ENDDLFLDLS LDHGPKSNII PTSSSDASRA ASNNNNNNNN 60 ESEPRIFSCN YCQRKFYSSQ ALGGHQNAHK RERTIAKRGQ KISSSAAFGY DKYSSMASLP 120 LHGSFNRSLG IQVHSMIHKP TISTTFGAPT LYGHPGWSIR RPIDQQXXXX XGQKATTAT* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562909.1 | 1e-121 | PREDICTED: zinc finger protein 1 | ||||
TrEMBL | A0A1U8G4I9 | 1e-119 | A0A1U8G4I9_CAPAN; zinc finger protein 1 | ||||
TrEMBL | A0A2G3CZF7 | 1e-119 | A0A2G3CZF7_CAPCH; Zinc finger protein 4 | ||||
STRING | Solyc03g117070.1.1 | 4e-87 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5827 | 22 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 1e-36 | C2H2 family protein |