PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g28750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | TCP | ||||||||
Protein Properties | Length: 362aa MW: 40693.5 Da PI: 6.7983 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 93.1 | 5.6e-29 | 52 | 167 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg.......... 88 g+kdrhsk++T +g+RdRR+Rls+++a +++dLqd+LG+ ++sk ++WLl++ k+ i++l+ ++ ++ ++ ++ +++ s+ ++ ++ CA03g28750 52 GGKDRHSKVCTIRGLRDRRIRLSVPTAVQLYDLQDRLGLSQPSKVVDWLLEATKHDIDKLPPLPVPPGYFTrfqQPLHQEYSDIHHVQHllnatlpyhh 150 78*************************************************************777775554433333333333222224444444444 PP TCP 89 ................k 89 + CA03g28750 151 hfdvdnlrqkskgidvE 167 44443332222222220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.4E-27 | 53 | 183 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.774 | 53 | 111 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MNSSGNNFQT KQESGGTSDS RLASKTTSTP SSSRQWGAFK NPRIVRVSRT FGGKDRHSKV 60 CTIRGLRDRR IRLSVPTAVQ LYDLQDRLGL SQPSKVVDWL LEATKHDIDK LPPLPVPPGY 120 FTRFQQPLHQ EYSDIHHVQH LLNATLPYHH HFDVDNLRQK SKGIDVESGT SGKNKLIANS 180 NQQENHQEDD IGGYCHQVSA QSFFPLGNRS PNLPFNSYYQ WEPNSSLSLA NFGQYNSSSS 240 QIQESHDQND FPLSLASSSS SGSQLYFNPI ATTFQPVVPG PNYMANETDL RQLNHFNFLC 300 SSSQHHHVHP NNPIFPTTLS LINSPMKPFS LNDDDPRWSN SRDDDDDDDN DNQLPHEGRA 360 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-18 | 58 | 112 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-18 | 58 | 112 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016563321.1 | 0.0 | PREDICTED: transcription factor TCP5 | ||||
Refseq | XP_016563322.1 | 0.0 | PREDICTED: transcription factor TCP5 | ||||
TrEMBL | A0A1U8FVX9 | 0.0 | A0A1U8FVX9_CAPAN; transcription factor TCP5 | ||||
TrEMBL | A0A1U8FW09 | 0.0 | A0A1U8FW09_CAPAN; Transcription factor TCP13 | ||||
STRING | XP_009781748.1 | 1e-129 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-47 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |