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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g22950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 183aa MW: 20433.7 Da PI: 8.6939 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 87.2 | 1.6e-27 | 8 | 63 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee..gtaaalkCaACgCHRnFHRrev 57 Y+eCl+NhAaslG++a+DGCgEf+ +++++ g + +l+CaACgCHRnFHR+ + CA03g22950 8 DIYRECLRNHAASLGSYATDGCGEFTLDDHNTspGGSFSLNCAACGCHRNFHRKIT 63 57************************986655467799***************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 6.1E-23 | 9 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-17 | 10 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.6E-23 | 10 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.148 | 10 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 94 | 165 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.28E-16 | 96 | 163 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.8E-26 | 105 | 163 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MQGDKSNDIY RECLRNHAAS LGSYATDGCG EFTLDDHNTS PGGSFSLNCA ACGCHRNFHR 60 KITCGGASYS NNXXXXXXXX XXXXXXXXXX XXTQESPAVS ERSGKKRFRT KFTTDQKEKM 120 LAFAEKLGWT LQRKDEENET ERFCKEVGVS RKVFKVWMHN HKNNSSSVSS NITANNASSL 180 TQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-21 | 106 | 167 | 18 | 78 | ZF-HD homeobox family protein |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 8e-98 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567717.1 | 1e-107 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
TrEMBL | A0A2G3A0P8 | 1e-114 | A0A2G3A0P8_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400083993 | 1e-103 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11865 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 9e-38 | homeobox protein 22 |