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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g17370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | B3 | ||||||||
Protein Properties | Length: 77aa MW: 8587.97 Da PI: 9.1345 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.6 | 1.4e-10 | 4 | 64 | 34 | 96 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +t+ l+ +++r W v + k g+ vl+++W+ F+ gLk gD ++F+l++ s++ +v+v CA03g17370 4 ITIYLKGPDNRPWPVIY--HEKFGSKVLAGNWELFAAVYGLKPGDECLFQLSDLSKRMVNVHV 64 79***************..9999999************************9765888666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.348 | 1 | 66 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.83E-12 | 3 | 68 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.78E-10 | 3 | 64 | No hit | No description |
Pfam | PF02362 | 1.6E-7 | 4 | 64 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-9 | 5 | 63 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MGRITIYLKG PDNRPWPVIY HEKFGSKVLA GNWELFAAVY GLKPGDECLF QLSDLSKRMV 60 NVHVAHKVDV TQTTLS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235796 | 4e-76 | AC235796.1 Solanum lycopersicum chromosome 3 clone C03HBa0052G03, complete sequence. | |||
GenBank | BT013851 | 4e-76 | BT013851.1 Lycopersicon esculentum clone 132811R, mRNA sequence. | |||
GenBank | HG975442 | 4e-76 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 4e-76 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016564752.1 | 5e-47 | PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X2 | ||||
Refseq | XP_016564753.1 | 5e-47 | PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X2 | ||||
Refseq | XP_016564754.1 | 5e-47 | PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X2 | ||||
TrEMBL | A0A1U8FZX8 | 1e-45 | A0A1U8FZX8_CAPAN; B3 domain-containing protein Os02g0598200-like isoform X2 | ||||
TrEMBL | A0A1U8G9P0 | 1e-45 | A0A1U8G9P0_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079658 | 3e-41 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2210 | 23 | 52 |