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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g12830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 840aa MW: 96385.3 Da PI: 7.1058 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87 | 2.8e-27 | 67 | 153 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ + ++t+Cka+++vk+++dgkw ++++ ++HnHel p CA03g12830 67 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDTG---SSRRPSLKKTDCKASMHVKRKRDGKWFIHEFIKKHNHELLP 153 9***************************************999877...7888899*******************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-24 | 67 | 153 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.4E-26 | 273 | 365 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.101 | 553 | 589 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.6E-6 | 562 | 588 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.2E-9 | 564 | 591 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MVDHGDVVQS NVQLTGDMVD AVDKACHSRD GGVSRSPKRN ITGVEENADV EPHDGIEFES 60 HEAAYAFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD TGSSRRPSLK 120 KTDCKASMHV KRKRDGKWFI HEFIKKHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS 180 ERTRKMYVEM SRQCGGSQEI GLLANDLNYQ FDKGRCLSLE EGDAQVMLEY FMHIQKENPY 240 FFYAVDLNED QRLRNLFWVD AKSRKDYVSI SDVVFFDTSY MKSNEKMPFA LFIGVNHHCQ 300 PMLLGCALVA DETKPTFVWL MKTWLRAMDG QAPKVIITDQ DKSLKEAIEN IFPCSHHCFA 360 LWHVLERIPE ILAHVVKQHE NFMEKFSKCI FKSATDEQFD LRWWKMVSRF ELQENEWVHT 420 LYEDRKKWVP AYMRGRFMAG MSAAQRSESV SSFFDKYIQK KISLKEFMRQ YGMILQNRYE 480 EEAVADFDTL HKQPALKSPS PWEKQMSTIY THAIFKKFQV EVLGVVGCHP KKEAENGENV 540 TFRVDDCEKD DNFMVTWNES RSDVSCSCLL FEYKGFLCRH AMIVLQMCGL SSIPSQFILK 600 RWTKDATNVL TFEGTERIQT RVQRYNDLCR RAILLGEEGS LSEESYDIAF RVLDEALKNC 660 VNVNNRSSAL TECSSSAVGL RDLEGDTQGI HFTKTCRKKS TNKKRKVHSE PEAAIVEAED 720 SLQQMDNLTV GGMTLNGYYG THQNMQGLIQ LNLMEPPHDG YYVNQQNMQG LGHLNTATPD 780 HDGFFGSQQS VPGLGHLDFR LPSFTYGLQG TNNIQHLMSL QDEPSLRGAQ LHGNNARHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00434 | DAP | Transfer from AT4G15090 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016565037.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_016565038.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_016565039.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_016565040.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_016565042.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_016565043.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_016565044.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_016565045.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_016565046.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A1U8G0T1 | 0.0 | A0A1U8G0T1_CAPAN; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A1U8G0Z8 | 0.0 | A0A1U8G0Z8_CAPAN; protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
STRING | Solyc08g060840.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA496 | 21 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |