PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g11650
Common NameHSFA6B
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 360aa    MW: 41131.1 Da    PI: 5.0337
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g11650genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.5e-36471382102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sw++ g+sfvv+d++ f++ +Lp++Fkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F kg+k+ll++ik
    CA03g11650  47 FLTKTYEMVDDSTIDHIVSWNRGGQSFVVWDPHAFSTMLLPRFFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEAFLKGNKQLLRNIK 134
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    CA03g11650 135 RRKT 138
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-3643136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5843136IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.7E-3943136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.8E-3247136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MNNNPLYSVK EEYPGSSSGG DGGEPPPPTM MTPQPMEGLH DIGPPPFLTK TYEMVDDSTI  60
DHIVSWNRGG QSFVVWDPHA FSTMLLPRFF KHNNFSSFVR QLNTYGFRKI DPERWEFANE  120
AFLKGNKQLL RNIKRRKTPN SESLPTAQAL GPCVELGRFG FDGEVDRLRR DKHVLMMELV  180
KLRQNQQNTR AYLRSLELRL QGTERKQQQM MNFLARAMQN PEFIQQIIQQ KGKRKEIEEA  240
ITKKRQRPID QGSSSSTLHV GGSSHSIKSE PLEFGETSGF QVSELEALAL EMQGFGRARR  300
DQQEDMTERL EQFGYTDKEL DAGFWEELFN EEDVSENEDG EEEGVNVLAE RLGFMDSSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-244513827131Heat shock factor protein 1
5d5v_B5e-244513827131Heat shock factor protein 1
5d5v_D5e-244513827131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2679990.0KF267999.1 Capsicum annuum heat stress transcription factor A-6b (HSFA6B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311804.10.0heat stress transcription factor A-7a-like
SwissprotQ9LUH81e-125HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1U8G2440.0A0A1U8G244_CAPAN; heat stress transcription factor A-7a-like
TrEMBLX2F6170.0X2F617_CAPAN; Heat stress transcription factor A-2b
STRINGPGSC0003DMT4000497930.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-98heat shock transcription factor A6B