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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g08050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 758aa MW: 86469.4 Da PI: 6.5769 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.8 | 2.4e-20 | 59 | 152 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ ++ +w++t +++ HnHel CA03g08050 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSEDGKLQRNRKSSRCGCQAFMRIVNRAdfnVPEWRITGFSNVHNHELL 152 6***************999887455667********************9*******************98887676789*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-17 | 59 | 152 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.2E-21 | 275 | 366 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.225 | 551 | 587 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.3E-8 | 559 | 585 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.5E-6 | 562 | 589 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 758 aa Download sequence Send to blast |
MTEITNIANE TSENGTDSSQ DDIGTVEEMP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSEDGKL QRNRKSSRCG 120 CQAFMRIVNR ADFNVPEWRI TGFSNVHNHE LLRSTEVQLI PAYCTMSPDD KSRICMFAKA 180 GMSVRQMLRL MELEKGVKLG CLTFTEVDVR SLLQSFRNVD QDNDPIDLLK LCKEMKDKEP 240 KFKYDYKIDC NNRLEHIAWS YASSMRLYEA FGDAIVFDTT HRLDAYDMLL GIWIGVDNHG 300 SLCFFGCVLL REESLQSFSW ALKTFLGFMN GKAPGTILTD QNLWLKEAIA TEIPRVKHAF 360 CIWNIISRFS DWFSTLLGSQ YDNWKAEFHR LYNLHSIEEY EVGWNEMVET YRMDGNKHIA 420 SLYALRSYWA LPFLRSFFFA GMTSTFQSET MNTYIQRILS AQSVLDNFVE QVARVVDAKD 480 QAGAKHKVLR NVQKVFLKTG SPIESHAATV LTPYAFSKLQ EELVFAPQYA SLMVDESYFV 540 VRHHKEMDGG YKVLWVPHDE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDQYLPMRW 600 REVTSSLAKS TLFTLPSDHM GKLQLLQSMI STLINESVET EERLNVVCDE VSTVLSRIKG 660 FPTASNGGNG IAYASPSDSL ILAEVEDSEG IGQSFTCNPH ECINLSKLKE RGSRDGLDLY 720 RKRRRFSIPC CGQYGHDAND CPMMEGEDLN GDRLGFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 720 | 724 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016565829.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1 | ||||
Refseq | XP_016565830.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A2G2ZVM3 | 0.0 | A0A2G2ZVM3_CAPAN; Protein FAR1-RELATED SEQUENCE 11 | ||||
STRING | Solyc09g075640.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13535 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Publications ? help Back to Top | |||
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