PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g06850
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 363aa    MW: 42296.2 Da    PI: 5.129
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g06850genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.5e-36371292103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sws+ +nsf+v+d+++fa ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+h+ F +g+++ l++i+
    CA03g06850  37 FLTKTYELVDDQSTDDVVSWSRGNNSFIVWDPQTFAMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDQ---------WEFAHEGFLRGQRHILKTIR 124
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    CA03g06850 125 RRKTS 129
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3830121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.14E-3432126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5933126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-193760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3137126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1988100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDPNFGPIKE EFLGSNEPTM WIPQPIEGLN ENGPPPFLTK TYELVDDQST DDVVSWSRGN  60
NSFIVWDPQT FAMNLLPRYF KHSNFSSFVR QLNTYGFRKV NPDQWEFAHE GFLRGQRHIL  120
KTIRRRKTSN FHHGQASNQG IDTYVELGKL EIDGEMDRLR REKKHLMMEL VELKQHQQTT  180
KSHIKAMEEK LKRTETKQQQ MMNFLAKAMQ NPKFLEQMMQ QKERRKELEE EIRNKKRRQI  240
DHQGPSNVGD LGHSVDNNDR SFSIKMEPHE YYYGDQIDGF DDLELERSLA MSMQGQSGNT  300
INLAQDYTDI ENEATTNEGF WERLLSENVE GDINLLDIEG ENEEDNVDIL AHHLGFLGST  360
PK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-263512918123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223237RRKELEEEIRNKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565945.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-118HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1U8G4880.0A0A1U8G488_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZV530.0A0A2G2ZV53_CAPAN; heat stress transcription factor A-6b-like
STRINGPGSC0003DMT4000165110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-111heat shock transcription factor A6B