PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g06080

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ZF-HD

Protein Properties

Length: 655aa MW: 71915.3 Da PI: 6.9803

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g06080	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	63.9	3.2e-20	422	465	3	47
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACg 47 +vrY+eClkNhAas+GghavDG gEfmps g gt++alkCaA + CA03g06080 422 SVRYQECLKNHAASMGGHAVDGYGEFMPS-GGIGTPEALKCAASD 465 69************************9.7889*******64 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.5E-17	423	465	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.4E-18	424	465	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-11	424	472	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	17.999	425	474	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MKEIRIDFRA KNLLKVQVKI RHCTSRQILF LFTNEEDYYT ILYKRAFILA GSLMQISWSS 60 PDSHHEVVSA SNPIWSLTDK KLPMQNQNIH PDFRFSDANP VNWNTDTSKL HPSINVLSAA 120 QNIIARSPYD VMDYSSSMCS TYSVPPFVTD WSFGMTSLNH KNQQPPSRGW NHRSKLTSDI 180 SISCEETRSN SQAIVLSSSV QQLLKKEVVI SYPSDLTEAD REKPSLEMPN VSFPTRSPPR 240 SIGSVIQAMS KLKVLDDPNS VNRSVSDSSK PTQQSATMVN SAETAVLLNA DPHKGIKPKA 300 MEKPSVQSVS ITAKNFQSHH VTAPATDEKP QVPAISQCLS APSVPPPLPL LGHSASIAAL 360 IFGRNEQAGR ESTFPSPSKA LDQHSLAQQH NQLNSYKEPN MTVGIAQLQP PSTTSVSETT 420 ISVRYQECLK NHAASMGGHA VDGYGEFMPS GGIGTPEALK CAASDVGSHS TFSPPRNISS 480 SDSIQNQAPI SAPTRQLHHH HSLVDSSPYS SQPPSPKSGP VFSQQGLERI EPSFILPSYS 540 YEMVNHDTVQ NGQQRNENWN ADMFKLLNNR TPDHIPSEFP TCPSWCQSQS VFADEFPHLE 600 IINNLLHEEH GTGQTLLSNS GFPSLNDGSS HHRTAHFTHP NDIGMFTSLG PSTS*

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MKEIRIDFRA KNLLKVQVKI RHCTSRQILF LFTNEEDYYT ILYKRAFILA GSLMQISWSS  60
PDSHHEVVSA SNPIWSLTDK KLPMQNQNIH PDFRFSDANP VNWNTDTSKL HPSINVLSAA  120
QNIIARSPYD VMDYSSSMCS TYSVPPFVTD WSFGMTSLNH KNQQPPSRGW NHRSKLTSDI  180
SISCEETRSN SQAIVLSSSV QQLLKKEVVI SYPSDLTEAD REKPSLEMPN VSFPTRSPPR  240
SIGSVIQAMS KLKVLDDPNS VNRSVSDSSK PTQQSATMVN SAETAVLLNA DPHKGIKPKA  300
MEKPSVQSVS ITAKNFQSHH VTAPATDEKP QVPAISQCLS APSVPPPLPL LGHSASIAAL  360
IFGRNEQAGR ESTFPSPSKA LDQHSLAQQH NQLNSYKEPN MTVGIAQLQP PSTTSVSETT  420
ISVRYQECLK NHAASMGGHA VDGYGEFMPS GGIGTPEALK CAASDVGSHS TFSPPRNISS  480
SDSIQNQAPI SAPTRQLHHH HSLVDSSPYS SQPPSPKSGP VFSQQGLERI EPSFILPSYS  540
YEMVNHDTVQ NGQQRNENWN ADMFKLLNNR TPDHIPSEFP TCPSWCQSQS VFADEFPHLE  600
IINNLLHEEH GTGQTLLSNS GFPSLNDGSS HHRTAHFTHP NDIGMFTSLG PSTS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016480031.1	1e-162	PREDICTED: uncharacterized protein LOC107801256 isoform X2
TrEMBL	A0A2G3CSV4	0.0	A0A2G3CSV4_CAPCH; Uncharacterized protein
STRING	XP_009776472.1	1e-160	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14101	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-14	homeobox protein 22