PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g29990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 471aa MW: 53733.3 Da PI: 5.0358 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 342.6 | 6.5e-105 | 98 | 468 | 3 | 374 |
GRAS 3 elLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL++cA+a+++ d +a++lL+++++++sp gd +qRla+yf+ AL+arla+ ++ +yk ++ ++ts ++ l+a+ l+ +P+ ++ + + CA02g29990 98 SLLISCAQAIAAADDCpNATELLKQIRQRSSPFGDGNQRLAHYFADALEARLAGIGNDIYKVISNRKTS---AADFLKAYDLYLASCPFRRIPNYVSSM 193 79********9965555***********************************************99999...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +I+ +++++r+HiiDf+i +G+QWpaL+q +a +++gpp+lRiTg++ p++g +e++eetg+rLa +Ae++++ fe+++ +ak++e++ le+L ++ CA02g29990 194 TIMSKADNATRIHIIDFGILYGFQWPALIQRIAFKEAGPPKLRITGIELPQPGfrPAERIEETGRRLAIYAERFNILFEYQA-IAKKWETILLEDLMLD 291 ****************************************************9*****************************.7*************** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +++ l+Vn+ ++ ++l+de+ es ++ vL+l+++++P+++++ + ++++sF++rf e l+y+salfd+l + +pre er +Er ++gre+ n CA02g29990 292 KNDFLVVNCLYRCKNLPDETELEESSKTIVLNLIRKINPDIFIHGIVNGAYSAPSFVTRFHEVLSYFSALFDMLGTVVPREIPERLLIERDIFGREALN 390 *********************9999************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v+aceg er+er et+++W+ r +a F+++p++ +++k +r + + + ++ee+++l+lgWk+r ++++S+W+ CA02g29990 391 VIACEGLERVERPETYKQWQVRNLRAMFTQIPFEREIMKRSIEAVRSSYHKDFVIDEEDQWLLLGWKGRVIYALSCWT 468 *****************************************99999999888*************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.228 | 70 | 448 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-102 | 98 | 468 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MDPKFNTSVN EFHPEDQSIS SSSDLLKSNE PRCDSSRPEN SELEAVYTES TVCSEEFDRV 60 LLLGTGKKWD ELAAYRESMK NGASMETSKN DDVVDLPSLL ISCAQAIAAA DDCPNATELL 120 KQIRQRSSPF GDGNQRLAHY FADALEARLA GIGNDIYKVI SNRKTSAADF LKAYDLYLAS 180 CPFRRIPNYV SSMTIMSKAD NATRIHIIDF GILYGFQWPA LIQRIAFKEA GPPKLRITGI 240 ELPQPGFRPA ERIEETGRRL AIYAERFNIL FEYQAIAKKW ETILLEDLML DKNDFLVVNC 300 LYRCKNLPDE TELEESSKTI VLNLIRKINP DIFIHGIVNG AYSAPSFVTR FHEVLSYFSA 360 LFDMLGTVVP REIPERLLIE RDIFGREALN VIACEGLERV ERPETYKQWQ VRNLRAMFTQ 420 IPFEREIMKR SIEAVRSSYH KDFVIDEEDQ WLLLGWKGRV IYALSCWTPT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-44 | 103 | 469 | 26 | 380 | Protein SCARECROW |
5b3h_A | 4e-44 | 103 | 469 | 25 | 379 | Protein SCARECROW |
5b3h_D | 4e-44 | 103 | 469 | 25 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561604.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 1e-172 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A1U8G0V3 | 0.0 | A0A1U8G0V3_CAPAN; Scarecrow-like protein 9 | ||||
TrEMBL | A0A2G3ACP8 | 0.0 | A0A2G3ACP8_CAPAN; scarecrow-like protein 9 | ||||
STRING | XP_009622916.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-174 | GRAS family protein |