PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g28760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 149aa MW: 17004.4 Da PI: 8.3708 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.1 | 2.9e-38 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk++rrkC+++Cvla yfpa+qpkkf+n+h+lFG++n++++l++l++e+ + dam+s+++e+++r + Pv G+v+ i++l+qql+ + el++++ CA02g28760 9 SCAACKYQRRKCTPKCVLASYFPADQPKKFQNAHRLFGVRNIVRTLEQLDDEDqKADAMKSIIFESDMREKFPVFGCVECISHLRQQLQIALLELQYVN 107 6************************************************666649***********************************999999987 PP DUF260 99 ee 100 + CA02g28760 108 GQ 109 66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.498 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-36 | 9 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MTGGTSRVSC AACKYQRRKC TPKCVLASYF PADQPKKFQN AHRLFGVRNI VRTLEQLDDE 60 DQKADAMKSI IFESDMREKF PVFGCVECIS HLRQQLQIAL LELQYVNGQL DIYKRRQQHS 120 SESSVGNGML MVPFFSSIED EYSRNHTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-26 | 2 | 113 | 4 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-26 | 2 | 113 | 4 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562288.1 | 1e-108 | PREDICTED: LOB domain-containing protein 27-like | ||||
Swissprot | Q9STS6 | 9e-37 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A2G3AC68 | 1e-107 | A0A2G3AC68_CAPAN; LOB domain-containing protein 27 | ||||
STRING | XP_009795991.1 | 5e-64 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 4e-39 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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