PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g23390

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 278aa MW: 30272.3 Da PI: 8.0662

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g23390	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.2	8.2e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++s++yeA+ r+ +P+yG+vg+++++++ql+q ++e+ CA02g23390 4 SCNGCRVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLMNLINAGPHHLRPAIFRSMLYEACGRIVNPIYGSVGLLWSGNWQLCQNAVEA 102 6************************************************************************************************99 PP DUF260 95 allke 99 +l ++ CA02g23390 103 VLKGA 107 98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.379	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PESQSNATVF LAKFYGRAGL MNLINAGPHH 60 LRPAIFRSML YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLKGAPIT PIASETAVNN 120 NGPPLKLPYD IRHISKDENN STKPSDLHRV RTRCRFKRSG NKKTKEAKPN PVCSGSGKAN 180 GSTSHESSLS HQSEAAAVAA ANLECESREI ESLQSTEMAE AEDSGMAKEE EGEIELELTL 240 GFSSSFATAH DHHIRKETKA VYLLDDAGEC KMKLGLH*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	1e-101	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016560725.1	0.0	PREDICTED: LOB domain-containing protein 41
Swissprot	Q9M886	1e-94	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1U8FPS6	0.0	A0A1U8FPS6_CAPAN; LOB domain-containing protein 41
TrEMBL	A0A2G3AAY5	0.0	A0A2G3AAY5_CAPAN; LOB domain-containing protein 41
STRING	XP_009801662.1	1e-159	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-88	LOB domain-containing protein 41