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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g20420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | bZIP | ||||||||
Protein Properties | Length: 237aa MW: 25939.8 Da PI: 9.0945 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26 | 2e-08 | 157 | 179 | 5 | 27 |
CHHHCHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkae 27 ++ r++kNRe+A rsR+RK+++ CA02g20420 157 RKNQRMIKNRESAARSRARKQES 179 6789*****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.1E-14 | 152 | 215 | No hit | No description |
SMART | SM00338 | 5.6E-8 | 153 | 227 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.91E-6 | 157 | 215 | No hit | No description |
CDD | cd14707 | 5.29E-22 | 157 | 221 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 161 | 175 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MWSSSSDNRG LSASSKSTSS SASSSSHSPF SPGLKTMEEV WKDINLSSLQ DHTTNIYSTD 60 HDHHQGANFG GAILQDFLAR PFANEPSPPA AAAATASPVP ASTMLNLNSV PEFHFFDNPL 120 MQNSILHPST DSCQVVPNVS GRKRVVPETD NNSGGDRKNQ RMIKNRESAA RSRARKQESA 180 IHFFIFIAYM NELEMEVAHL VEENARLKKQ QQQLRLAAAA QVPRKNSLYR ASTAPF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-63 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562137.1 | 1e-135 | PREDICTED: protein FD | ||||
Swissprot | Q84JK2 | 3e-43 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A2G3A9W3 | 1e-174 | A0A2G3A9W3_CAPAN; Uncharacterized protein | ||||
STRING | Solyc02g083520.2.1 | 3e-94 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3572 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 3e-27 | bZIP family protein |