PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g20290
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 633aa    MW: 72552.5 Da    PI: 6.2685
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g20290genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.81.7e-5661331128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lppGfrFhPtdeelv +yLk+k+++kk+el e+i+evd+yk+ePw+Lp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s ++
  CA02g20290   6 LPPGFRFHPTDEELVAYYLKRKINNKKIEL-EIIPEVDLYKCEPWELPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-QT 102
                 79****************************.99***************6434555777**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 ++vg+kktLv+y+grap+g +tdWvmheyrl
  CA02g20290 103 RAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133
                 99***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-624155IPR003441NAC domain
PROSITE profilePS5100560.9716156IPR003441NAC domain
PfamPF023653.5E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKINN KKIELEIIPE VDLYKCEPWE LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECEV ANGLQDAYAL CRVIKRSLNN NGPKIGEKYY GSAAISDRSS  180
SIDQVYSEGR GDLHDIESSH DHEYGIMPSS SSSSMAVHGS PINTNASALT DDRWMQYLSN  240
EAFTFNNNNT AQPIPNYGTL PFLPSKVDIA LECARLQHRF TLPPLEIQDF PQVGYVDHDA  300
KMPQSSFINQ DSWGGNSNLC APIDDFSFLI PPNNNQIHHD LSSFNFMEQD DNVIRSIDIG  360
DFDHEDFKSD RMVENLRWIG MSNRDLEKKF FEDYKTVPID NVSSVQRDHE FQAENSGQNN  420
SFNSGLNETE ANNFSMGFGN DNLLGDGDVT DGFSSCPSFQ VYGKIEVNHG FFIATRQASK  480
TFYHQVTPSR TLTIHRNLVP LHDFPKNRAP HDNFVTKVTR PWTTTMRTLV SMVAILQTLW  540
LYVGECLELE EKGFKLEDKK GIYEECCLIE RVEKKKVEDF KWDIYKQSKF PIGDKDEGIK  600
YCCYLEKKWP NYLTLVVALS SIWLHHIIVP SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-53115612165NO APICAL MERISTEM PROTEIN
1ut4_B6e-53115612165NO APICAL MERISTEM PROTEIN
1ut7_A6e-53115612165NO APICAL MERISTEM PROTEIN
1ut7_B6e-53115612165NO APICAL MERISTEM PROTEIN
3ulx_A7e-53213311140Stress-induced transcription factor NAC1
4dul_A6e-53115612165NAC domain-containing protein 19
4dul_B6e-53115612165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-170HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562105.10.0PREDICTED: NAC domain-containing protein 86
TrEMBLA0A2G3A9A70.0A0A2G3A9A7_CAPAN; NAC domain-containing protein 53
STRINGSolyc02g081270.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14952348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-123NAC domain containing protein 28