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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g20090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | B3 | ||||||||
Protein Properties | Length: 151aa MW: 17439.4 Da PI: 8.6371 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.7 | 1.6e-16 | 46 | 125 | 5 | 87 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++++++++++l+lpk f++++g+ + +++l e+ r W+v l + ++r+ +++GW +F kang+++gD+ +F+l+++ CA02g20090 46 TIKHYTFTKAILCLPKGFTKSNGLMD--KHEMILVEEKQRLWTVWL-GKMDPRRFGIKSGWPQFRKANGVQVGDTYMFELTDN 125 56899*****************7773..348***************.6888889*************************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-19 | 36 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-19 | 38 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.58E-13 | 41 | 135 | No hit | No description |
PROSITE profile | PS50863 | 12.365 | 42 | 136 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.8E-10 | 43 | 136 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-14 | 46 | 127 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MFLFSSFLGY FTVIKDLRHK ALDMTTPISQ IPTSTSADAN PHFISTIKHY TFTKAILCLP 60 KGFTKSNGLM DKHEMILVEE KQRLWTVWLG KMDPRRFGIK SGWPQFRKAN GVQVGDTYMF 120 ELTDNGTIPI MHVHCECFFI FLWFNDYLVC * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-49 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168742.1 | 6e-55 | PREDICTED: B3 domain-containing protein REM17-like | ||||
Refseq | XP_025888305.1 | 3e-52 | putative B3 domain-containing protein REM15 | ||||
TrEMBL | A0A2G3A9T3 | 1e-109 | A0A2G3A9T3_CAPAN; Uncharacterized protein | ||||
STRING | Solyc08g006220.2.1 | 2e-56 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 1e-12 | B3 family protein |