PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g19130
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 729aa    MW: 80925.7 Da    PI: 4.5412
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g19130genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-12563606146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r rW++++ el+++av+q+G++  ++I + ++ gRt+ q+k+++ k
       CA02g19130 563 RTRWSKQDTELFYEAVQQFGTD-LSLIQQLFP-GRTRRQLKLKYKK 606
                      78********************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.5E-28556640No hitNo description
PROSITE profilePS5129310.285561609IPR017884SANT domain
SMARTSM007171.5E-10562610IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-7563606IPR009057Homeodomain-like
SuperFamilySSF466893.36E-10564613IPR009057Homeodomain-like
CDDcd001671.28E-7565606No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MDLLDDIFAG GASKTVKAGG KFQPKAKPRP VKKGPAVASS AVSLTSKPTG DTVATDSFEA  60
LKTAKNSQNC YEQNYVSAEP SLEHPLKAET LGPSVGSSLD ASMVMTDTNE DWKSCFEKSE  120
GENADIYIGL DSFDDLLPHS SGIDPSAVHV AGAEKRQEQF LDPASSVDDS APSASHLQSD  180
EVAAAQDPST FQGSVLPVSG SCQMEMDPYP SLESDILGVT TISGQSRRFQ PKPKLRVYRE  240
RYDTIIPDSD VGDSVSSQPD SHYVHSEMGF VDNGKEHELP AAVVLDSLAR GFDNNIITES  300
AHEFSVHEEY VVEASLPDSG IPAKHSEATV QIPEEPVSQR PKTKKQKVRA SNLSAISEEN  360
RESRSLRSRR KSVNANRLVD ESEEVIDDGE YVPEHPNDSV TNGNDDDVLV ENDSQGETTL  420
KRSKKTVTKE GKRVRKSKKT AEASDQVANK KPKKFSHSTR QKRRTVDKAL LEAPEDEIDY  480
SKVPIKDLIL LAEHKERLAK KDPAASQIPT TDQSVGASFS NYDDDETYAV DEDGEANDHN  540
KSPRGEDTSA YFNYQTYMDK TPRTRWSKQD TELFYEAVQQ FGTDLSLIQQ LFPGRTRRQL  600
KLKYKKEERK NPFMLHDALT NRSKDHSHFE RVIEQLKQIE AEELQYADKD ESIGLTGEEE  660
MEGTQEVNEG EAMSEKQHTQ EEEAMPEHVD EKEVEAVGQD VPGIESPVKE DYDSEDDFLK  720
WSQYTSEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cnb_S9e-11524638375490Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnc_S9e-11524638375490Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnd_S9e-11524638375490Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnf_S9e-11524638375490Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6eu0_V1e-10524638375490Transcription factor TFIIIB component B''
6f40_W1e-10524638375490Transcription factor TFIIIB component B''
6f41_W1e-10524638375490Transcription factor TFIIIB component B''
6f42_W1e-10524638375490Transcription factor TFIIIB component B''
6f44_W1e-10524638375490Transcription factor TFIIIB component B''
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419438LKRSKKTVTKEGKRVRKSKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0488870.0GU048887.1 Capsicum annuum clone BAC CaCM511O09_Contig, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560253.10.0PREDICTED: uncharacterized protein LOC107859683
TrEMBLA0A1U8FV000.0A0A1U8FV00_CAPAN; uncharacterized protein LOC107859683
STRINGPGSC0003DMT4000457280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59022326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-51MYB_related family protein