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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g16000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HSF | ||||||||
Protein Properties | Length: 202aa MW: 23373.9 Da PI: 9.4203 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.3 | 1.2e-33 | 31 | 126 | 2 | 102 |
HHHHHHHHHC....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeile....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y++le ++++++++sw+ +g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+YgFkk+ +++ weF+h++F+kg ++ll CA02g16000 31 FLSKTYDLLEeqeeESSINKVVSWNGEGSGFVVWCPAEFSEVMLPKYFKHNNFSSFIRQLNTYGFKKIASKR---------WEFQHEKFQKGCRHLL 118 9*********555555999**************************************************999.........**************** PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++i rkk CA02g16000 119 SEITRKKY 126 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 9.6E-35 | 23 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.6E-43 | 27 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.22E-28 | 28 | 124 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.2E-30 | 31 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-12 | 35 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-12 | 73 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 74 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-12 | 86 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MATDAIPAPV SDRNLSRKMG RSSRMKCPAP FLSKTYDLLE EQEEESSINK VVSWNGEGSG 60 FVVWCPAEFS EVMLPKYFKH NNFSSFIRQL NTYGFKKIAS KRWEFQHEKF QKGCRHLLSE 120 ITRKKYEPSA FPTYLNPSAK NIILGSTKEE INTSRQLLME ENQNLKREKM ELQMQIAHFK 180 ALEVKLLQCL TQCMESPHNK N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdk_A | 2e-18 | 27 | 124 | 7 | 110 | Heat shock factor protein 2 |
5hdk_B | 2e-18 | 27 | 124 | 7 | 110 | Heat shock factor protein 2 |
5hdk_C | 2e-18 | 27 | 124 | 7 | 110 | Heat shock factor protein 2 |
5hdk_D | 2e-18 | 27 | 124 | 7 | 110 | Heat shock factor protein 2 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226513 | 3e-70 | AC226513.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0005F12, complete sequence. | |||
GenBank | HG975514 | 3e-70 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561996.1 | 1e-150 | PREDICTED: heat stress transcription factor B-2a-like isoform X1 | ||||
TrEMBL | A0A1U8FS28 | 1e-148 | A0A1U8FS28_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G3A8F8 | 1e-148 | A0A2G3A8F8_CAPAN; heat stress transcription factor B-2a-like isoform X1 | ||||
STRING | Solyc02g078340.2.1 | 1e-107 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10707 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 3e-41 | heat shock transcription factor B2A |