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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g14130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 254aa MW: 29542.3 Da PI: 4.8762 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 42.6 | 1.5e-13 | 24 | 114 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++q + +L++a ++ +l+rg+l++++W+ vs+ + + ++ r+ +qCk++++ l+k+yk +k+ ++ + + +s++p+f++l+ CA02g14130 24 CWSEQATWTLVDAWGRRYMELNRGNLRQKDWQFVSDSVnalhgHTKKSWRTDIQCKNRIDTLKKKYKVEKAKIIESNGTLKSSWPFFERLD 114 7*************************************999988889999*******************99999887777789*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.3E-22 | 22 | 114 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGEITEFSPQ VTAPSRPLPF REDCWSEQAT WTLVDAWGRR YMELNRGNLR QKDWQFVSDS 60 VNALHGHTKK SWRTDIQCKN RIDTLKKKYK VEKAKIIESN GTLKSSWPFF ERLDLLIGNS 120 DKKVTPVMAS PLPLPLSSPP MGELFCGSCC XGEEDCDEEE EEDMEDMEEM DEESREDDGI 180 RRLAKAIERF GEIYERVEGM KQRQMVELEK QRMQFAKDLE VQRMQLFMDT QVQLERIKHT 240 KRSGSDGIKL TPF* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 1e-116 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015063492.1 | 1e-121 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A2G3A828 | 0.0 | A0A2G3A828_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400026432 | 1e-121 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1318 | 23 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 1e-51 | sequence-specific DNA binding transcription factors |