PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA02g08620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 315aa MW: 34525.5 Da PI: 9.101 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.6 | 5.2e-32 | 55 | 107 | 3 | 54 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHR 54 v+Y+eClkNhAa+lGghavDGCgEf+p ++++ +++++lkCaACgCHRnFHR CA02g08620 55 VVTYRECLKNHAAHLGGHAVDGCGEFLPIPSANpTDPTSLKCAACGCHRNFHR 107 689*****************************99******************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.0E-27 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.6E-29 | 57 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-20 | 58 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.274 | 58 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.28E-17 | 178 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.8E-29 | 182 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.8E-25 | 188 | 245 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 315 aa Download sequence Send to blast |
MDLTTKTTTT TTTTSVKTPE AETETPTRIQ QQKPFPFSDG VLKRKSHHQH RHLAVVTYRE 60 CLKNHAAHLG GHAVDGCGEF LPIPSANPTD PTSLKCAACG CHRNFHRPPP ISTAALEYQP 120 HHRHHPPPPP PPCGDHSSPN SSPSPPPISS AYYPASAPHM LLALSAGFSG EKNPNPTSTL 180 VAANSNGRKR FRTKFTSDQK AKMQEFAERV EWRMQKRDED LVSNFCNEIG VEKGVLKVWM 240 HNNKNTSGKK LDQHSGNIAN NIVNGFCIAS RKDGHYDKPD SEFHLLRESS NDNKKEHSVF 300 GANVFATNGS SSSS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-20 | 189 | 246 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 42 | 46 | KRKSH |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016559049.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 5e-68 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A1U8FTG1 | 0.0 | A0A1U8FTG1_CAPAN; zinc-finger homeodomain protein 9-like | ||||
STRING | Solyc02g067320.1.1 | 1e-135 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28920.1 | 2e-66 | homeobox protein 34 |
Publications ? help Back to Top | |||
---|---|---|---|
|