PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA02g08330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 250aa MW: 28490.3 Da PI: 5.2548 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 30.5 | 6.3e-10 | 4 | 66 | 34 | 99 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 kt l++ +g sWe k+ ++ +s ++ ++ W +F + ++ +gD+++F+l+++s+f +v++++k CA02g08330 4 KTCLLKTDEGLSWEAKI-VKETSHYFMCEGDWPRFLQHHKFVSGDMLIFYLVEKSTF--HVMLYSK 66 56779999*********.5666666999999********************988888..8888765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.661 | 1 | 67 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-8 | 4 | 66 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.8E-7 | 4 | 66 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.04E-9 | 5 | 66 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MLAKTCLLKT DEGLSWEAKI VKETSHYFMC EGDWPRFLQH HKFVSGDMLI FYLVEKSTFH 60 VMLYSKKSLT NIRHFEELSS SDEEEAAEEK GEVKNVETSR KAKKVKMEPV QLSYLGDKSD 120 SKADNMLDVE KKANEVKMEP VILSDSEEER VDPSSDWGNP CYWHPGGKSN AKADNMLGVK 180 NKAPVKIFRE LIELSDSEEE TVDPFPGSKE VGNTWCSHPG NIDPFIHLVY LICFQSIYAC 240 TRSMRHNEI* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016558923.1 | 1e-160 | PREDICTED: high mobility group B protein 6-like | ||||
TrEMBL | A0A1U8FR90 | 1e-159 | A0A1U8FR90_CAPAN; High mobility group B protein 2 | ||||
TrEMBL | A0A2G3A5Q9 | 1e-159 | A0A2G3A5Q9_CAPAN; high mobility group B protein 6-like | ||||
STRING | PGSC0003DMT400034109 | 4e-54 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4888 | 13 | 27 |